3t3f: Difference between revisions

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-[[Image:3t3f.png|left|200px]]
-<!--
+==Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP==
-The line below this paragraph, containing "STRUCTURE_3t3f", creates the "Structure Box" on the page.
+<StructureSection load='3t3f' size='340' side='right'caption='[[3t3f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3t3f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3F FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=N5P:1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE'>N5P</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_3t3f|  PDB=3t3f  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3f OCA], [https://pdbe.org/3t3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3f RCSB], [https://www.ebi.ac.uk/pdbsum/3t3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3f ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]
-===Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP===
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3t3f]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA].
+[[Category: Large Structures]]
-==Reference==
-<ref group="xtra">PMID:022318723</ref><references group="xtra"/>
-[[Category: DNA-directed DNA polymerase]]
 [[Category: Thermus aquaticus]]
-[[Category: Diederichs, K.]]
+[[Category: Diederichs K]]
-[[Category: Marx, A.]]
+[[Category: Marx A]]
-[[Category: Obeid, S.]]
+[[Category: Obeid S]]
-[[Category: A-rule]]
-[[Category: Abasic site]]
-[[Category: Base analogue]]
-[[Category: Base stacking]]
-[[Category: Dna polymerase]]
-[[Category: Dnitp]]
-[[Category: Nitroindol triphosphate]]
-[[Category: Transferase-dna complex]]
-[[Category: Translesion synthesis]]