3sq8: Difference between revisions

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-[[Image:3sq8.png|left|200px]]
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+==Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 1 H432R Mutant (SCAN1 Mutant)==
-The line below this paragraph, containing "STRUCTURE_3sq8", creates the "Structure Box" on the page.
+<StructureSection load='3sq8' size='340' side='right'caption='[[3sq8]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3sq8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SQ8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene></td></tr>
-{{STRUCTURE_3sq8|  PDB=3sq8  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sq8 OCA], [https://pdbe.org/3sq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sq8 RCSB], [https://www.ebi.ac.uk/pdbsum/3sq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sq8 ProSAT]</span></td></tr>
+</table>
-===Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase 1 H432R Mutant (SCAN1 Mutant)===
+== Function ==
+[https://www.uniprot.org/uniprot/TYDP1_YEAST TYDP1_YEAST] DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. Hydrolyzes 3'-phosphoglycolates on protruding 3' ends on DNA double-strand breaks due to DNA damage by radiation and free radicals. Cleaves also 5' phosphotyrosyl adducts resulting from dead-end complexes between DNA and the active site tyrosine of topoisomerase II. Contributes to DNA repair after radiation damage. Acts on blunt-ended double-strand DNA breaks and on single-stranded DNA. May have low 3'exonuclease activity and may be able to remove a single nucleoside from the 3'end of DNA and RNA molecules with 3'hydroxyl groups. Has no exonuclease activity towards DNA or RNA with a 3'phosphate (By similarity).<ref>PMID:10521354</ref> <ref>PMID:16751265</ref>
-<!--
-The line below this paragraph, {{ABSTRACT_PUBMED_22155078}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 22155078 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_22155078}}
-==About this Structure==
-[[3sq8]] is a 4 chain structure of [[Phosphodiesterase]] with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SQ8 OCA].
 ==See Also==
-*[[Phosphodiesterase]]
+*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:022155078</ref><references group="xtra"/>
+__TOC__
-[[Category: Saccharomyces cerevisiae]]
+</StructureSection>
-[[Category: Gajewski, S.]]
+[[Category: Large Structures]]
-[[Category: White, S W.]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Dna binding]]
+[[Category: Gajewski S]]
-[[Category: Hydrolase]]
+[[Category: White SW]]
-[[Category: Nuclear]]
-[[Category: Phosphodiesterase]]