3q5u: Difference between revisions

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 ==A minimal NLS from human scramblase 4 complexed with importin alpha==
-<StructureSection load='3q5u' size='340' side='right' caption='[[3q5u]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+<StructureSection load='3q5u' size='340' side='right'caption='[[3q5u]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3q5u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5U FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3q5u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5U FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1y2a|1y2a]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Kpna2, Rch1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5u OCA], [https://pdbe.org/3q5u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5u RCSB], [https://www.ebi.ac.uk/pdbsum/3q5u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5u ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5u OCA], [http://pdbe.org/3q5u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3q5u RCSB], [http://www.ebi.ac.uk/pdbsum/3q5u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5u ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/IMA2_MOUSE IMA2_MOUSE]] Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. [[http://www.uniprot.org/uniprot/PLS4_HUMAN PLS4_HUMAN]] May mediate accelerated ATP-independent bidirectional transbilayer migration of phospholipids upon binding calcium ions that results in a loss of phospholipid asymmetry in the plasma membrane. May play a central role in the initiation of fibrin clot formation, in the activation of mast cells and in the recognition of apoptotic and injured cells by the reticuloendothelial system.
+[https://www.uniprot.org/uniprot/IMA1_MOUSE IMA1_MOUSE] Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Importin alpha1 can bind classical nuclear localization signals (NLSs) in two NLS-binding sites, known as 'major' and 'minor'. The major site is located between ARM repeats 2-4, while the minor site spans ARM 7-8. In this study, we have characterized the cellular localization of human phospholipid scramblase 4 (hPLSCR4), a member of the phospholipid scramblase protein family. We identified a minimal NLS in hPLSCR4 ((273)GSIIRKWN(280)) that contains only two basic amino acids. This NLS is both necessary for nuclear localization of hPLSCR4 in transfected HeLa cells and sufficient for nuclear import of a non-diffusible cargo in permeabilized cells. Mutation of only one of the two basic residues, Arg(277), correlates with loss of nuclear localization, suggesting this amino acid plays a key role in nuclear transport. Crystallographic analysis of mammalian importin alpha1 in complex with the hPLSCR4-NLS reveals this minimal NLS binds specifically and exclusively to the minor binding site of importin alpha1. These data provide the first structural and functional evidence of a novel NLS-binding mode in importin alpha1 that uses only the minor groove as the exclusive site for nuclear import of non classical cargos.
-A minimal NLS in human phospholipid scramblase 4 that binds only the minor NLS-binding site of importin {alpha}1.,Lott K, Bhardwaj A, Sims PJ, Cingolani G J Biol Chem. 2011 Jun 20. PMID:21690087<ref>PMID:21690087</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 3q5u" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Protein Transport Membrane Protein|Protein Transport Membrane Protein]]
+*[[Importin 3D structures|Importin 3D structures]]
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Lk3 transgenic mice]]
+[[Category: Homo sapiens]]
-[[Category: Bhardwaj, A]]
+[[Category: Large Structures]]
-[[Category: Cingolani, G]]
+[[Category: Mus musculus]]
-[[Category: Armadillo repeat]]
+[[Category: Bhardwaj A]]
-[[Category: Protein transport]]
+[[Category: Cingolani G]]
-[[Category: Protein transport-membrane protein complex]]