8kd4: Difference between revisions

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'''Unreleased structure'''


The entry 8kd4 is ON HOLD
==Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1==
 
<StructureSection load='8kd4' size='340' side='right'caption='[[8kd4]], [[Resolution|resolution]] 2.93&Aring;' scene=''>
Authors: Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, C.K.H., Zhang, X., Chao, W.C.H., He, J.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[8kd4]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae], [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8KD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8KD4 FirstGlance]. <br>
Description: Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.93&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Wang, M]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8kd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8kd4 OCA], [https://pdbe.org/8kd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8kd4 RCSB], [https://www.ebi.ac.uk/pdbsum/8kd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8kd4 ProSAT]</span></td></tr>
[[Category: Li, H]]
</table>
[[Category: Dong, S]]
== Function ==
[[Category: Shi, X]]
[https://www.uniprot.org/uniprot/EAF3_YEAST EAF3_YEAST] Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.<ref>PMID:11036083</ref> <ref>PMID:14701747</ref> <ref>PMID:15045029</ref>
[[Category: Chao, W.C.H]]
== References ==
[[Category: Gao, X]]
<references/>
[[Category: Li, W]]
__TOC__
[[Category: Zhang, X]]
</StructureSection>
[[Category: Rasheed, N]]
[[Category: Large Structures]]
[[Category: Zhang, Y]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Guan, J]]
[[Category: Synthetic construct]]
[[Category: Wang, C]]
[[Category: Xenopus laevis]]
[[Category: Wong, C.K.H]]
[[Category: Chao WCH]]
[[Category: He, J]]
[[Category: Dong S]]
[[Category: Huang, J]]
[[Category: Gao X]]
[[Category: Li, M]]
[[Category: Guan J]]
[[Category: Zhou, N]]
[[Category: He J]]
[[Category: Zhou, M]]
[[Category: Huang J]]
[[Category: Zhang, J]]
[[Category: Li H]]
[[Category: Zou, B]]
[[Category: Li M]]
[[Category: Li W]]
[[Category: Rasheed N]]
[[Category: Shi X]]
[[Category: Wang C]]
[[Category: Wang M]]
[[Category: Wong KH]]
[[Category: Zhang J]]
[[Category: Zhang X]]
[[Category: Zhang Y]]
[[Category: Zhou M]]
[[Category: Zhou N]]
[[Category: Zou B]]

Latest revision as of 14:20, 14 March 2024

Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1

Structural highlights

8kd4 is a 16 chain structure with sequence from Saccharomyces cerevisiae, Xenopus laevis and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 2.93Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

EAF3_YEAST Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.[1] [2] [3]

References

  1. ↑ Eisen A, Utley RT, Nourani A, Allard S, Schmidt P, Lane WS, Lucchesi JC, Cote J. The yeast NuA4 and Drosophila MSL complexes contain homologous subunits important for transcription regulation. J Biol Chem. 2001 Feb 2;276(5):3484-91. Epub 2000 Oct 17. PMID:11036083 doi:http://dx.doi.org/10.1074/jbc.M008159200
  2. ↑ Reid JL, Moqtaderi Z, Struhl K. Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae. Mol Cell Biol. 2004 Jan;24(2):757-64. PMID:14701747
  3. ↑ Kobor MS, Venkatasubrahmanyam S, Meneghini MD, Gin JW, Jennings JL, Link AJ, Madhani HD, Rine J. A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. PLoS Biol. 2004 May;2(5):E131. Epub 2004 Mar 23. PMID:15045029 doi:10.1371/journal.pbio.0020131

8kd4, resolution 2.93Å

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