1cgm: Difference between revisions

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-[[Image:1cgm.gif|left|200px]]
-<!--
+==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==
-The line below this paragraph, containing "STRUCTURE_1cgm", creates the "Structure Box" on the page.
+<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-{{STRUCTURE_1cgm|  PDB=1cgm  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [https://pdbe.org/1cgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [https://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CAPSD_CGMVW CAPSD_CGMVW] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgm_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgm ConSurf].
+<div style="clear:both"></div>
-'''STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES'''
+==See Also==
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
+__TOC__
-==Overview==
+</StructureSection>
-Cucumber green mottle mosaic virus (CGMMV) is a rod-shaped virus of the tobacco mosaic virus (TMV) group. The structure of cucumber green mottle mosaic virus has been determined by fiber diffraction methods at 3.4 A resolution, and refined by molecular dynamics methods to an R factor of 0.093. Disassembly of TMV is driven by the mutual repulsion of intersubunit carboxyl-carboxylate pairs, but one of these pairs is not conserved in CGMMV. An alternative pair, located about 5 A from the site of the TMV pair, has been found in CGMMV. Comparison of the two structures suggests that the carboxylate groups are free to migrate in the subunit interfaces during evolution.
+[[Category: Cucumber green mottle mosaic virus]]
+[[Category: Large Structures]]
-==About this Structure==
+[[Category: Stubbs G]]
-CGM is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA].
+[[Category: Wang H]]
-==Reference==
-Structure determination of cucumber green mottle mosaic virus by X-ray fiber diffraction. Significance for the evolution of tobamoviruses., Wang H, Stubbs G, J Mol Biol. 1994 Jun 10;239(3):371-84. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8201619 8201619]
-[[Category: Single protein]]
-[[Category: Stubbs, G.]]
-[[Category: Wang, H.]]
-[[Category: Icosahedral virus]]
-[[Category: Virus]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 12:42:50 2008''