1bfy: Difference between revisions

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-[[Image:1bfy.gif|left|200px]]<br /><applet load="1bfy" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1bfy" />
-'''SOLUTION STRUCTURE OF REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, NMR, 20 STRUCTURES'''<br />
-==About this Structure==
+==SOLUTION STRUCTURE OF REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, NMR, 20 STRUCTURES==
-BFY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum] with FE as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Rubredoxin--NAD(+)_reductase Rubredoxin--NAD(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.1 1.18.1.1] Known structural/functional Site: <scene name='pdbsite=FEB:Fe Binding Site'>FEB</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BFY OCA].
+<StructureSection load='1bfy' size='340' side='right'caption='[[1bfy]]' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1bfy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BFY FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bfy OCA], [https://pdbe.org/1bfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bfy RCSB], [https://www.ebi.ac.uk/pdbsum/1bfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bfy ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/1bfy_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bfy ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
+*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
+__TOC__
+</StructureSection>
 [[Category: Clostridium pasteurianum]]
-[[Category: Rubredoxin--NAD(+) reductase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Bertini I]]
-[[Category: Bertini, I.]]
+[[Category: Eidsness MK]]
-[[Category: Eidsness, M.K.]]
+[[Category: Kurtz Junior DM]]
-[[Category: Junior, D.M.Kurtz.]]
+[[Category: Liu G]]
-[[Category: Liu, G.]]
+[[Category: Luchinat C]]
-[[Category: Luchinat, C.]]
+[[Category: Rosato A]]
-[[Category: Rosato, A.]]
+[[Category: Scott RA]]
-[[Category: Scott, R.A.]]
-[[Category: FE]]
-[[Category: electron transport]]
-[[Category: nuclear relaxation]]
-[[Category: paramagnetism]]
-[[Category: rubredoxin]]
-[[Category: solution structure]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 14:26:34 2007''