6pm9: Difference between revisions

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OCA

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-'''Unreleased structure'''
-The entry 6pm9 is ON HOLD
+==Crystal structure of the core catalytic domain of human O-GlcNAcase bound to MK-8719==
+<StructureSection load='6pm9' size='340' side='right'caption='[[6pm9]], [[Resolution|resolution]] 2.86&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6pm9]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PM9 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.86&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OQ1:(3aR,5S,6S,7R,7aR)-5-(difluoromethyl)-2-(ethylamino)-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol'>OQ1</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pm9 OCA], [https://pdbe.org/6pm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pm9 RCSB], [https://www.ebi.ac.uk/pdbsum/6pm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pm9 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/OGA_HUMAN OGA_HUMAN] Isoform 1: Cleaves GlcNAc but not GalNAc from O-glycosylated proteins. Can use p-nitrophenyl-beta-GlcNAc and 4-methylumbelliferone-GlcNAc as substrates but not p-nitrophenyl-beta-GalNAc or p-nitrophenyl-alpha-GlcNAc (in vitro) (PubMed:11148210). Does not bind acetyl-CoA and does not have histone acetyltransferase activity (PubMed:24088714).<ref>PMID:11148210</ref> <ref>PMID:11788610</ref> <ref>PMID:20673219</ref> <ref>PMID:22365600</ref> <ref>PMID:24088714</ref>   Isoform 3: Cleaves GlcNAc but not GalNAc from O-glycosylated proteins. Can use p-nitrophenyl-beta-GlcNAc as substrate but not p-nitrophenyl-beta-GalNAc or p-nitrophenyl-alpha-GlcNAc (in vitro), but has about six times lower specific activity than isoform 1.<ref>PMID:20673219</ref>
-Authors: Klein, D.J., Selnick, H.G., Duffy, J.L., McEachern, E.J.
+==See Also==
+*[[O-GlcNAcase|O-GlcNAcase]]
-Description: Crystal structure of the core catalytic domain of human O-GlcNAcase bound to MK-8719
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
-[[Category: Mceachern, E.J]]
+__TOC__
-[[Category: Duffy, J.L]]
+</StructureSection>
-[[Category: Selnick, H.G]]
+[[Category: Homo sapiens]]
-[[Category: Klein, D.J]]
+[[Category: Large Structures]]
+[[Category: Duffy JL]]
+[[Category: Klein DJ]]
+[[Category: McEachern EJ]]
+[[Category: Selnick HG]]