6ec0: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 3: / Line 3: @@
 <StructureSection load='6ec0' size='340' side='right'caption='[[6ec0]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6ec0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EC0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EC0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6ec0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EC0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6EC0 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.983&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6e2j|6e2j]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KRT1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), KRT10, KPP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ec0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ec0 OCA], [https://pdbe.org/6ec0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ec0 RCSB], [https://www.ebi.ac.uk/pdbsum/6ec0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ec0 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ec0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ec0 OCA], [http://pdbe.org/6ec0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ec0 RCSB], [http://www.ebi.ac.uk/pdbsum/6ec0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ec0 ProSAT]</span></td></tr>
 </table>
-== Disease ==
+== Function ==
-[[http://www.uniprot.org/uniprot/K1C10_HUMAN K1C10_HUMAN]] Congenital reticular ichthyosiform erythroderma;Annular epidermolytic ichthyosis;Epidermolytic ichthyosis. The disease is caused by mutations affecting the gene represented in this entry.  The disease is caused by mutations affecting the gene represented in this entry.  The disease is caused by mutations affecting the gene represented in this entry.
+[https://www.uniprot.org/uniprot/H6VRG1_HUMAN H6VRG1_HUMAN]
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-To characterize keratin intermediate filament assembly mechanisms at atomic resolution, we determined the crystal structure of wild-type human keratin-1/keratin-10 helix 1B heterotetramer at 3.0 A resolution. It revealed biochemical determinants for the A11 mode of axial alignment in keratin filaments. Four regions on a hydrophobic face of the K1/K10-1B heterodimer dictated tetramer assembly: the N-terminal hydrophobic pocket (defined by L227(K1), Y230(K1), F231(K1), and F234(K1)), the K10 hydrophobic stripe, K1 interaction residues, and the C-terminal anchoring knob (formed by F314(K1) and L318(K1)). Mutation of both knob residues to alanine disrupted keratin 1B tetramer and full-length filament assembly. Individual knob residue mutant F314A(K1), but not L318A(K1), abolished 1B tetramer formation. The K1-1B knob/pocket mechanism is conserved across keratins and many non-keratin intermediate filaments. To demonstrate how pathogenic mutations cause skin disease by altering filament assembly, we additionally determined the 2.39 A structure of K1/10-1B containing a S233L(K1) mutation linked to epidermolytic palmoplantar keratoderma. Light scattering and circular dichroism measurements demonstrated enhanced aggregation of K1(S233L)/K10-1B in solution without affecting secondary structure. The K1(S233L)/K10-1B octamer structure revealed S233L(K1) causes aberrant hydrophobic interactions between 1B tetramers.
-Human keratin 1/10-1B tetramer structures reveal a knob-pocket mechanism in intermediate filament assembly.,Eldirany SA, Ho M, Hinbest AJ, Lomakin IB, Bunick CG EMBO J. 2019 Apr 29. pii: embj.2018100741. doi: 10.15252/embj.2018100741. PMID:31036554<ref>PMID:31036554</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 6ec0" style="background-color:#fffaf0;"></div>
 ==See Also==
 *[[Keratins|Keratins]]
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
 [[Category: Large Structures]]
-[[Category: Bunick, C G]]
+[[Category: Bunick CG]]
-[[Category: Eldirany, S A]]
+[[Category: Eldirany SA]]
-[[Category: Lomakin, I B]]
+[[Category: Lomakin IB]]
-[[Category: Coiled-coil]]
-[[Category: Intermediate filament]]
-[[Category: Keratin]]
-[[Category: Protein fibril]]
-[[Category: Skin]]