6duq: Difference between revisions

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==Structure of a Rho-NusG KOW domain complex==
==Structure of a Rho-NusG KOW domain complex==
<StructureSection load='6duq' size='340' side='right' caption='[[6duq]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
<StructureSection load='6duq' size='340' side='right'caption='[[6duq]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6duq]] is a 26 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DUQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DUQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[6duq]] is a 26 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_M605 Escherichia coli M605], [https://en.wikipedia.org/wiki/Escherichia_coli_M718 Escherichia coli M718] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DUQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DUQ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6duq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6duq OCA], [http://pdbe.org/6duq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6duq RCSB], [http://www.ebi.ac.uk/pdbsum/6duq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6duq ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6duq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6duq OCA], [https://pdbe.org/6duq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6duq RCSB], [https://www.ebi.ac.uk/pdbsum/6duq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6duq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/F4TMM7_ECOLX F4TMM7_ECOLX]] Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.[HAMAP-Rule:MF_01884] [[http://www.uniprot.org/uniprot/F4T6L5_ECOLX F4T6L5_ECOLX]] Participates in transcription elongation, termination and antitermination. In the absence of Rho, increases the rate of transcription elongation by the RNA polymerase (RNAP), probably by partially suppressing pausing. In the presence of Rho, modulates most Rho-dependent termination events by interacting with the RNAP to render the complex more susceptible to the termination activity of Rho. May be required to overcome a kinetic limitation of Rho to function at certain terminators. Also involved in ribosomal RNA transcriptional antitermination.[HAMAP-Rule:MF_00948]  
[https://www.uniprot.org/uniprot/RHO_ECOLI RHO_ECOLI] Facilitates transcription termination by a mechanism that involves rho binding to the nascent RNA, activation of rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template. RNA-dependent NTPAse which utilizes all four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_01884]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
NusG/Spt5 proteins are the only transcription factors utilized by all cellular organisms. In enterobacteria, NusG antagonizes the transcription termination activity of Rho, a hexameric helicase, during the synthesis of ribosomal and actively translated mRNAs. Paradoxically, NusG helps Rho act on untranslated transcripts, including non-canonical antisense RNAs and those arising from translational stress; how NusG fulfills these disparate functions is unknown. Here, we demonstrate that NusG activates Rho by assisting helicase isomerization from an open-ring, RNA-loading state to a closed-ring, catalytically active translocase. A crystal structure of closed-ring Rho in complex with NusG reveals the physical basis for this activation and further explains how Rho is excluded from translationally competent RNAs. This study demonstrates how a universally conserved transcription factor acts to modulate the activity of a ring-shaped ATPase motor and establishes how the innate sequence bias of a termination factor can be modulated to silence pervasive, aberrant transcription.


Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.,Lawson MR, Ma W, Bellecourt MJ, Artsimovitch I, Martin A, Landick R, Schulten K, Berger JM Mol Cell. 2018 Aug 10. pii: S1097-2765(18)30583-5. doi:, 10.1016/j.molcel.2018.07.014. PMID:30122535<ref>PMID:30122535</ref>
==See Also==
 
*[[Helicase 3D structures|Helicase 3D structures]]
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6duq" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Berger, J M]]
[[Category: Escherichia coli M605]]
[[Category: Lawson, M R]]
[[Category: Escherichia coli M718]]
[[Category: Atpase]]
[[Category: Large Structures]]
[[Category: Nusg]]
[[Category: Synthetic construct]]
[[Category: Reca]]
[[Category: Berger JM]]
[[Category: Rho]]
[[Category: Lawson MR]]
[[Category: Transcription]]
[[Category: Transcription-rna complex]]

Latest revision as of 17:36, 13 March 2024

Structure of a Rho-NusG KOW domain complexStructure of a Rho-NusG KOW domain complex

Structural highlights

6duq is a 26 chain structure with sequence from Escherichia coli M605, Escherichia coli M718 and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.7Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RHO_ECOLI Facilitates transcription termination by a mechanism that involves rho binding to the nascent RNA, activation of rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template. RNA-dependent NTPAse which utilizes all four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_01884]

See Also

6duq, resolution 3.70Å

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