6c1a: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-'''Unreleased structure'''
-The entry 6c1a is ON HOLD
+==MBD2 in complex with methylated DNA==
+<StructureSection load='6c1a' size='340' side='right'caption='[[6c1a]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6c1a]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C1A FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c1a OCA], [https://pdbe.org/6c1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c1a RCSB], [https://www.ebi.ac.uk/pdbsum/6c1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c1a ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MBD2_HUMAN MBD2_HUMAN] Binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. Binds hemimethylated DNA as well. Recruits histone deacetylases and DNA methyltransferases. Acts as transcriptional repressor and plays a role in gene silencing. Functions as a scaffold protein, targeting GATAD2A and GATAD2B to chromatin to promote repression. May enhance the activation of some unmethylated cAMP-responsive promoters.<ref>PMID:10471499</ref> <ref>PMID:10947852</ref> <ref>PMID:12665568</ref> <ref>PMID:16415179</ref> <ref>PMID:24307175</ref> <ref>PMID:9774669</ref>
-Authors: Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics Consortium, Structural Genomics Consortium (SGC)
+==See Also==
+*[[Methyl CpG binding protein 3D structures|Methyl CpG binding protein 3D structures]]
-Description: MBD2 in complex with methylated DNA
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
-[[Category: Min, J]]
+__TOC__
-[[Category: Edwards, A.M]]
+</StructureSection>
-[[Category: Arrowsmith, C.H]]
+[[Category: Homo sapiens]]
-[[Category: Xu, C]]
+[[Category: Large Structures]]
-[[Category: Structural Genomics Consortium, Structural Genomics Consortium (Sgc)]]
+[[Category: Synthetic construct]]
-[[Category: Liu, K]]
+[[Category: Arrowsmith CH]]
-[[Category: Bountra, C]]
+[[Category: Bountra C]]
-[[Category: Tempel, W]]
+[[Category: Edwards AM]]
+[[Category: Liu K]]
+[[Category: Min J]]
+[[Category: Tempel W]]
+[[Category: Xu C]]