3cdi: Difference between revisions

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[[Image:3cdi.jpg|left|200px]]


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==Crystal structure of E. coli PNPase==
The line below this paragraph, containing "STRUCTURE_3cdi", creates the "Structure Box" on the page.
<StructureSection load='3cdi' size='340' side='right'caption='[[3cdi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdi OCA], [https://pdbe.org/3cdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdi RCSB], [https://www.ebi.ac.uk/pdbsum/3cdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdi ProSAT]</span></td></tr>
{{STRUCTURE_3cdi|  PDB=3cdi |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/PNP_ECOLI PNP_ECOLI] Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction.[HAMAP-Rule:MF_01595]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdi ConSurf].
<div style="clear:both"></div>


===Crystal structure of E. coli PNPase===
==See Also==
 
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 
__TOC__
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</StructureSection>
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{{ABSTRACT_PUBMED_18812438}}
 
==About this Structure==
3CDI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA].
 
==Reference==
Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation., Shi Z, Yang WZ, Lin-Chao S, Chak KF, Yuan HS, RNA. 2008 Nov;14(11):2361-71. Epub 2008 Sep 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18812438 18812438]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Polyribonucleotide nucleotidyltransferase]]
[[Category: Large Structures]]
[[Category: Chak, K F.]]
[[Category: Chak KF]]
[[Category: Lin-Chao, S.]]
[[Category: Lin-Chao S]]
[[Category: Shi, Z.]]
[[Category: Shi Z]]
[[Category: Yang, W Z.]]
[[Category: Yang WZ]]
[[Category: Yuan, H S.]]
[[Category: Yuan HS]]
[[Category: Crystal structure]]
[[Category: Kinase]]
[[Category: Mrna turnover]]
[[Category: Polynucleotide phosphorylase]]
[[Category: Rna degradation]]
[[Category: Rnase]]
[[Category: Transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:03:15 2008''

Latest revision as of 17:04, 13 March 2024

Crystal structure of E. coli PNPaseCrystal structure of E. coli PNPase

Structural highlights

3cdi is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PNP_ECOLI Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction.[HAMAP-Rule:MF_01595]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3cdi, resolution 2.60Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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