2yri: Difference between revisions

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{{Seed}}
[[Image:2yri.png|left|200px]]


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==Crystal structure of alanine-pyruvate aminotransferase with 2-methylserine==
The line below this paragraph, containing "STRUCTURE_2yri", creates the "Structure Box" on the page.
<StructureSection load='2yri' size='340' side='right'caption='[[2yri]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2yri]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YRI FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MMM:(S,E)-3-HYDROXY-2-((3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL)METHYLENEAMINO)-2-METHYLPROPANOIC+ACID'>MMM</scene>, <scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene></td></tr>
{{STRUCTURE_2yri|  PDB=2yri  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yri OCA], [https://pdbe.org/2yri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yri RCSB], [https://www.ebi.ac.uk/pdbsum/2yri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yri ProSAT], [https://www.topsan.org/Proteins/RSGI/2yri TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of alanine-pyruvate aminotransferase with 2-methylserine===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SLX0_THET8 Q5SLX0_THET8]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2YRI is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YRI OCA].  
Check<jmol>
[[Category: Thermus thermophilus]]
  <jmolCheckbox>
[[Category: Goto, M.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/2yri_consurf.spt"</scriptWhenChecked>
[[Category: Hirotsu, K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Matsumura, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Miyahara, I.]]
  </jmolCheckbox>
[[Category: Omi, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yri ConSurf].
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
<div style="clear:both"></div>
[[Category: Aminotransferase]]
__TOC__
[[Category: National project on protein structural and functional analyse]]
</StructureSection>
[[Category: Nppsfa]]
[[Category: Large Structures]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Thermus thermophilus HB8]]
[[Category: Rsgi]]
[[Category: Goto M]]
[[Category: Structural genomic]]
[[Category: Hirotsu K]]
 
[[Category: Matsumura M]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:29:19 2008''
[[Category: Miyahara I]]
[[Category: Omi R]]

Latest revision as of 16:54, 13 March 2024

Crystal structure of alanine-pyruvate aminotransferase with 2-methylserineCrystal structure of alanine-pyruvate aminotransferase with 2-methylserine

Structural highlights

2yri is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.05Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5SLX0_THET8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2yri, resolution 2.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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