2q5k: Difference between revisions

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-[[Image:2q5k.png|left|200px]]
-{{STRUCTURE_2q5k|  PDB=2q5k  |  SCENE=  }}
+==Crystal structure of lopinavir bound to wild type HIV-1 protease==
+<StructureSection load='2q5k' size='340' side='right'caption='[[2q5k]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-===Crystal structure of lopinavir bound to wild type HIV-1 protease===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2q5k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5K FirstGlance]. <br>
-{{ABSTRACT_PUBMED_17696512}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AB1:N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE'>AB1</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5k OCA], [https://pdbe.org/2q5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5k RCSB], [https://www.ebi.ac.uk/pdbsum/2q5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5k ProSAT]</span></td></tr>
-[[2q5k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5K OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/O38710_9HIV1 O38710_9HIV1]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/2q5k_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q5k ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Lopinavir|Lopinavir]]
+*[[Immunodeficiency virus protease 3D structures|Immunodeficiency virus protease 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:017696512</ref><references group="xtra"/>
 [[Category: Human immunodeficiency virus 1]]
-[[Category: Nalam, M N.L.]]
+[[Category: Large Structures]]
-[[Category: Schiffer, C A.]]
+[[Category: Nalam MNL]]
-[[Category: Drug design]]
+[[Category: Schiffer CA]]
-[[Category: Hiv-1 protease]]
-[[Category: Hydrolase]]
-[[Category: Protease inhibitor]]