2epl: Difference between revisions

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[[Image:2epl.png|left|200px]]


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==N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii==
The line below this paragraph, containing "STRUCTURE_2epl", creates the "Structure Box" on the page.
<StructureSection load='2epl' size='340' side='right'caption='[[2epl]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2epl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_gordonii Streptococcus gordonii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EPL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2epl|  PDB=2epl  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2epl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2epl OCA], [https://pdbe.org/2epl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2epl RCSB], [https://www.ebi.ac.uk/pdbsum/2epl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2epl ProSAT]</span></td></tr>
 
</table>
===N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii===
== Function ==
 
[https://www.uniprot.org/uniprot/Q6ST21_STRGN Q6ST21_STRGN]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18237743}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ep/2epl_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18237743}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2EPL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_gordonii Streptococcus gordonii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EPL OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2epl ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structure of N-acetyl-beta-D-glucosaminidase (GcnA) from the endocarditis pathogen Streptococcus gordonii and its complex with the mechanism-based inhibitor NAG-thiazoline., Langley DB, Harty DW, Jacques NA, Hunter N, Guss JM, Collyer CA, J Mol Biol. 2008 Mar 14;377(1):104-16. Epub 2007 Sep 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18237743 18237743]
</StructureSection>
[[Category: Beta-N-acetylhexosaminidase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Streptococcus gordonii]]
[[Category: Streptococcus gordonii]]
[[Category: Collyer, C A.]]
[[Category: Collyer CA]]
[[Category: Guss, J M.]]
[[Category: Guss JM]]
[[Category: Harty, D W.S.]]
[[Category: Harty DWS]]
[[Category: Langley, D B.]]
[[Category: Langley DB]]
[[Category: Family 20]]
[[Category: Gcna]]
[[Category: Glucosaminidase]]
[[Category: Glycoside hydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 12:35:18 2008''

Latest revision as of 16:50, 13 March 2024

N-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordoniiN-acetyl-B-D-glucosaminidase (GCNA) from Streptococcus gordonii

Structural highlights

2epl is a 1 chain structure with sequence from Streptococcus gordonii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q6ST21_STRGN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2epl, resolution 1.40Å

Drag the structure with the mouse to rotate

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OCA
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