2e84: Difference between revisions

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-[[Image:2e84.png|left|200px]]
-{{STRUCTURE_2e84|  PDB=2e84  |  SCENE=  }}
+==Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion==
+<StructureSection load='2e84' size='340' side='right'caption='[[2e84]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-===Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2e84]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E84 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[2e84]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'miyazaki_f' Desulfovibrio vulgaris str. 'miyazaki f']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E84 OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e84 OCA], [https://pdbe.org/2e84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e84 RCSB], [https://www.ebi.ac.uk/pdbsum/2e84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e84 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8VUI3_DESVU Q8VUI3_DESVU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/2e84_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e84 ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Cytochrome c|Cytochrome c]]
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-[[Category: Desulfovibrio vulgaris str. 'miyazaki f']]
+__TOC__
-[[Category: Higuchi, Y.]]
+</StructureSection>
-[[Category: Kitamura, M.]]
+[[Category: Desulfovibrio vulgaris str. 'Miyazaki F']]
-[[Category: Morimoto, Y.]]
+[[Category: Large Structures]]
-[[Category: Sato, M.]]
+[[Category: Higuchi Y]]
-[[Category: Shibata, N.]]
+[[Category: Kitamura M]]
-[[Category: Suto, K.]]
+[[Category: Morimoto Y]]
-[[Category: Cytochrome c3 motif]]
+[[Category: Sato M]]
-[[Category: Electron transport]]
+[[Category: Shibata N]]
+[[Category: Suto K]]