2d59: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(16 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2d59.jpg|left|200px]]


{{Structure
==hypothetical protein from Pyrococcus horikoshii OT3==
|PDB= 2d59 |SIZE=350|CAPTION= <scene name='initialview01'>2d59</scene>, resolution 1.65&Aring;
<StructureSection load='2d59' size='340' side='right'caption='[[2d59]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[2d59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D59 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
|GENE= ph1109 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d59 OCA], [https://pdbe.org/2d59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d59 RCSB], [https://www.ebi.ac.uk/pdbsum/2d59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d59 ProSAT], [https://www.topsan.org/Proteins/RSGI/2d59 TOPSAN]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=[[2d5a|2D5A]]
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d59 OCA], [http://www.ebi.ac.uk/pdbsum/2d59 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d59 RCSB]</span>
[https://www.uniprot.org/uniprot/O58836_PYRHO O58836_PYRHO]
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''hypothetical protein from Pyrococcus horikoshii OT3'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d59_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
2D59 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D59 OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Pyrococcus horikoshii]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d59 ConSurf].
[[Category: Hiyama, B T.]]
<div style="clear:both"></div>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
__TOC__
[[Category: Sekine, S.]]
</StructureSection>
[[Category: Yokoyama, S.]]
[[Category: Large Structures]]
[[Category: coa binding]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: hypothetical protein]]
[[Category: Hiyama TB]]
[[Category: national project on protein structural and functional analyse]]
[[Category: Sekine S]]
[[Category: nppsfa]]
[[Category: Yokoyama S]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:30:30 2008''

Latest revision as of 16:46, 13 March 2024

hypothetical protein from Pyrococcus horikoshii OT3hypothetical protein from Pyrococcus horikoshii OT3

Structural highlights

2d59 is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.65Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O58836_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2d59, resolution 1.65Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2d59&oldid=4088647"