2d4v: Difference between revisions

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[[Image:2d4v.png|left|200px]]


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==Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans==
The line below this paragraph, containing "STRUCTURE_2d4v", creates the "Structure Box" on the page.
<StructureSection load='2d4v' size='340' side='right'caption='[[2d4v]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2d4v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidithiobacillus_thiooxidans Acidithiobacillus thiooxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D4V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
{{STRUCTURE_2d4v|  PDB=2d4v |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d4v OCA], [https://pdbe.org/2d4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d4v RCSB], [https://www.ebi.ac.uk/pdbsum/2d4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d4v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8GAX0_ACITH Q8GAX0_ACITH]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/2d4v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d4v ConSurf].
<div style="clear:both"></div>


===Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans===
==See Also==
 
*[[Isocitrate dehydrogenase 3D structures|Isocitrate dehydrogenase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_17634983}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 17634983 is the PubMed ID number.
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{{ABSTRACT_PUBMED_17634983}}
 
==About this Structure==
2D4V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Acidithiobacillus_thiooxidans Acidithiobacillus thiooxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D4V OCA].
 
==Reference==
Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity., Imada K, Tamura T, Takenaka R, Kobayashi I, Namba K, Inagaki K, Proteins. 2008 Jan 1;70(1):63-71. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17634983 17634983]
[[Category: Acidithiobacillus thiooxidans]]
[[Category: Acidithiobacillus thiooxidans]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Imada, K.]]
[[Category: Imada K]]
[[Category: Inagaki, K.]]
[[Category: Inagaki K]]
[[Category: Namba, K.]]
[[Category: Namba K]]
[[Category: Tamura, T.]]
[[Category: Tamura T]]
[[Category: Alpha and beta protein]]
[[Category: Isocitrate/isopropylmalate dehydrogenase-like fold]]
[[Category: Oxidoreductase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 20:48:56 2008''

Latest revision as of 16:46, 13 March 2024

Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidansCrystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans

Structural highlights

2d4v is a 4 chain structure with sequence from Acidithiobacillus thiooxidans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q8GAX0_ACITH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2d4v, resolution 1.90Å

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OCA
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