2d3o: Difference between revisions

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{{Seed}}
[[Image:2d3o.png|left|200px]]


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==Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans==
The line below this paragraph, containing "STRUCTURE_2d3o", creates the "Structure Box" on the page.
<StructureSection load='2d3o' size='340' side='right'caption='[[2d3o]], [[Resolution|resolution]] 3.35&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2d3o]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D3O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D3O FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d3o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d3o OCA], [https://pdbe.org/2d3o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d3o RCSB], [https://www.ebi.ac.uk/pdbsum/2d3o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d3o ProSAT]</span></td></tr>
{{STRUCTURE_2d3o| PDB=2d3o |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RL23_DEIRA RL23_DEIRA] One of the early assembly protein (By similarity) it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. Forms the main docking site for trigger factor binding to the ribosome (PubMed:16091460 and PubMed:16271892).[HAMAP-Rule:MF_01369]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/2d3o_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d3o ConSurf].
<div style="clear:both"></div>


===Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans===
==See Also==
 
*[[Ribosomal protein L23|Ribosomal protein L23]]
 
*[[Ribosomal protein L24|Ribosomal protein L24]]
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*[[Ribosomal protein L29|Ribosomal protein L29]]
The line below this paragraph, {{ABSTRACT_PUBMED_16271892}}, adds the Publication Abstract to the page
*[[Ribosome 3D structures|Ribosome 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 16271892 is the PubMed ID number.
__TOC__
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</StructureSection>
{{ABSTRACT_PUBMED_16271892}}
 
==About this Structure==
2D3O is a 5 chains structure of sequences from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D3O OCA].
 
==Reference==
<ref group="xtra">PMID:16271892</ref><references group="xtra"/>
[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
[[Category: Albrecht, R.]]
[[Category: Large Structures]]
[[Category: Buerger, J.]]
[[Category: Albrecht R]]
[[Category: Fucini, P.]]
[[Category: Buerger J]]
[[Category: Hansen, H A.]]
[[Category: Fucini P]]
[[Category: Harms, J M.]]
[[Category: Hansen HA]]
[[Category: McInnes, S J.]]
[[Category: Harms JM]]
[[Category: Schluenzen, F.]]
[[Category: McInnes SJ]]
[[Category: Tian, P.]]
[[Category: Schluenzen F]]
[[Category: Wilbanks, S M.]]
[[Category: Tian P]]
[[Category: Wilson, D N.]]
[[Category: Wilbanks SM]]
[[Category: 50]]
[[Category: Wilson DN]]
[[Category: Nascent chain]]
[[Category: Protein folding]]
[[Category: Ribosome]]
[[Category: Srp]]
[[Category: Trigger factor]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:00:22 2009''

Latest revision as of 16:46, 13 March 2024

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransStructure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Structural highlights

2d3o is a 5 chain structure with sequence from Deinococcus radiodurans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.35Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RL23_DEIRA One of the early assembly protein (By similarity) it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. Forms the main docking site for trigger factor binding to the ribosome (PubMed:16091460 and PubMed:16271892).[HAMAP-Rule:MF_01369]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2d3o, resolution 3.35Å

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