2cvf: Difference between revisions

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{{Seed}}
[[Image:2cvf.png|left|200px]]


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==Crystal structure of the RadB recombinase==
The line below this paragraph, containing "STRUCTURE_2cvf", creates the "Structure Box" on the page.
<StructureSection load='2cvf' size='340' side='right'caption='[[2cvf]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2cvf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CVF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cvf OCA], [https://pdbe.org/2cvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cvf RCSB], [https://www.ebi.ac.uk/pdbsum/2cvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvf ProSAT]</span></td></tr>
{{STRUCTURE_2cvf| PDB=2cvf |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RADB_THEKO RADB_THEKO] Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cv/2cvf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cvf ConSurf].
<div style="clear:both"></div>


===Crystal structure of the RadB recombinase===
==See Also==
 
*[[Resolvase 3D structures|Resolvase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15956102}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15956102 is the PubMed ID number.
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{{ABSTRACT_PUBMED_15956102}}
 
==About this Structure==
2CVF is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVF OCA].
 
==Reference==
<ref group="xtra">PMID:15956102</ref><references group="xtra"/>
[[Category: Thermococcus kodakarensis]]
[[Category: Thermococcus kodakarensis]]
[[Category: Akiba, T.]]
[[Category: Akiba T]]
[[Category: Harata, K.]]
[[Category: Harata K]]
[[Category: Imanaka, T.]]
[[Category: Imanaka T]]
[[Category: Ishii, N.]]
[[Category: Ishii N]]
[[Category: Morikawa, M.]]
[[Category: Morikawa M]]
[[Category: Rashid, N.]]
[[Category: Rashid N]]
[[Category: Atpase domain]]
[[Category: Filament formation]]
[[Category: Homologous recombination]]
[[Category: Hyperthermophile]]
[[Category: Radb]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:19:50 2009''

Latest revision as of 16:43, 13 March 2024

Crystal structure of the RadB recombinaseCrystal structure of the RadB recombinase

Structural highlights

2cvf is a 2 chain structure with sequence from Thermococcus kodakarensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RADB_THEKO Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2cvf, resolution 2.60Å

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