1x1p: Difference between revisions

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{{Seed}}
[[Image:1x1p.png|left|200px]]


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==Crystal structure of Tk-RNase HII(1-197)-A(28-42)==
The line below this paragraph, containing "STRUCTURE_1x1p", creates the "Structure Box" on the page.
<StructureSection load='1x1p' size='340' side='right'caption='[[1x1p]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1x1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1P FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1p OCA], [https://pdbe.org/1x1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1p RCSB], [https://www.ebi.ac.uk/pdbsum/1x1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1p ProSAT]</span></td></tr>
{{STRUCTURE_1x1p| PDB=1x1p |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RNH2_THEKO RNH2_THEKO] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1p_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x1p ConSurf].
<div style="clear:both"></div>


===Crystal structure of Tk-RNase HII(1-197)-A(28-42)===
==See Also==
 
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_16367755}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 16367755 is the PubMed ID number.
[[Category: Thermococcus kodakarensis KOD1]]
-->
[[Category: Chon H]]
{{ABSTRACT_PUBMED_16367755}}
[[Category: Endo S]]
 
[[Category: Kanaya S]]
==About this Structure==
[[Category: Koga Y]]
1X1P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1P OCA].
[[Category: Matsumura H]]
 
[[Category: Mukaiyama A]]
==Reference==
[[Category: Takano K]]
Structure of amyloid beta fragments in aqueous environments., Takano K, Endo S, Mukaiyama A, Chon H, Matsumura H, Koga Y, Kanaya S, FEBS J. 2006 Jan;273(1):150-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16367755 16367755]
[[Category: Ribonuclease H]]
[[Category: Single protein]]
[[Category: Thermococcus kodakarensis]]
[[Category: Chon, H.]]
[[Category: Endo, S.]]
[[Category: Kanaya, S.]]
[[Category: Koga, Y.]]
[[Category: Matsumura, H.]]
[[Category: Mukaiyama, A.]]
[[Category: Takano, K.]]
[[Category: Amyloid peptide]]
[[Category: Ribonuclease hii]]
[[Category: Thermococcus kodakaraensis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 12:01:59 2008''

Latest revision as of 16:35, 13 March 2024

Crystal structure of Tk-RNase HII(1-197)-A(28-42)Crystal structure of Tk-RNase HII(1-197)-A(28-42)

Structural highlights

1x1p is a 1 chain structure with sequence from Thermococcus kodakarensis KOD1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.8Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RNH2_THEKO Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1x1p, resolution 2.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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