1wdk: Difference between revisions

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-{{Seed}}
-[[Image:1wdk.png|left|200px]]
-<!--
+==fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)==
-The line below this paragraph, containing "STRUCTURE_1wdk", creates the "Structure Box" on the page.
+<StructureSection load='1wdk' size='340' side='right'caption='[[1wdk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1wdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fragi Pseudomonas fragi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=N8E:3,6,9,12,15-PENTAOXATRICOSAN-1-OL'>N8E</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_1wdk|  PDB=1wdk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdk OCA], [https://pdbe.org/1wdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdk RCSB], [https://www.ebi.ac.uk/pdbsum/1wdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FADB_PSEFR FADB_PSEFR] Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate.[HAMAP-Rule:MF_01621]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wdk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wdk ConSurf].
+<div style="clear:both"></div>
-===fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)===
+==See Also==
+*[[Thiolase 3D structures|Thiolase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_15229654}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 15229654 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15229654}}
-==About this Structure==
-WDK is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fragi Pseudomonas fragi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDK OCA].
-==Reference==
-Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex., Ishikawa M, Tsuchiya D, Oyama T, Tsunaka Y, Morikawa K, EMBO J. 2004 Jul 21;23(14):2745-54. Epub 2004 Jul 1. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15229654 15229654]
-Reconstitution, morphology and crystallization of a fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi., Ishikawa M, Mikami Y, Usukura J, Iwasaki H, Shinagawa H, Morikawa K, Biochem J. 1997 Dec 15;328 ( Pt 3):815-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9396725 9396725]
-[[Category: Acetyl-CoA C-acyltransferase]]
-[[Category: Protein complex]]
 [[Category: Pseudomonas fragi]]
-[[Category: Ishikawa, M.]]
+[[Category: Ishikawa M]]
-[[Category: Morikawa, K.]]
+[[Category: Morikawa K]]
-[[Category: Oyama, T.]]
+[[Category: Oyama T]]
-[[Category: Tsuchiya, D.]]
+[[Category: Tsuchiya D]]
-[[Category: Tsunaka, Y.]]
+[[Category: Tsunaka Y]]
-[[Category: Alpha2beta2 heterotetrameric complex]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 08:05:51 2008''