1wdk: Difference between revisions

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[[Image:1wdk.png|left|200px]]


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==fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)==
The line below this paragraph, containing "STRUCTURE_1wdk", creates the "Structure Box" on the page.
<StructureSection load='1wdk' size='340' side='right'caption='[[1wdk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1wdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fragi Pseudomonas fragi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=N8E:3,6,9,12,15-PENTAOXATRICOSAN-1-OL'>N8E</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1wdk| PDB=1wdk |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdk OCA], [https://pdbe.org/1wdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdk RCSB], [https://www.ebi.ac.uk/pdbsum/1wdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdk ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FADB_PSEFR FADB_PSEFR] Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate.[HAMAP-Rule:MF_01621]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wdk_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wdk ConSurf].
<div style="clear:both"></div>


===fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)===
==See Also==
 
*[[Thiolase 3D structures|Thiolase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15229654}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15229654 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_15229654}}
 
==About this Structure==
[[1wdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fragi Pseudomonas fragi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDK OCA].
 
==Reference==
<ref group="xtra">PMID:15229654</ref><ref group="xtra">PMID:9396725</ref><references group="xtra"/>
[[Category: Acetyl-CoA C-acyltransferase]]
[[Category: Pseudomonas fragi]]
[[Category: Pseudomonas fragi]]
[[Category: Ishikawa, M.]]
[[Category: Ishikawa M]]
[[Category: Morikawa, K.]]
[[Category: Morikawa K]]
[[Category: Oyama, T.]]
[[Category: Oyama T]]
[[Category: Tsuchiya, D.]]
[[Category: Tsuchiya D]]
[[Category: Tsunaka, Y.]]
[[Category: Tsunaka Y]]
[[Category: Alpha2beta2 heterotetrameric complex]]
[[Category: Lyase]]
[[Category: Oxidoreductase/transferase complex]]

Latest revision as of 16:31, 13 March 2024

fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)

Structural highlights

1wdk is a 4 chain structure with sequence from Pseudomonas fragi. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FADB_PSEFR Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate.[HAMAP-Rule:MF_01621]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1wdk, resolution 2.50Å

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OCA
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