1wdi: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1wdi.jpg|left|200px]]
-<!--
+==Crystal Structure Of TT0907 From Thermus Thermophilus HB8==
-The line below this paragraph, containing "STRUCTURE_1wdi", creates the "Structure Box" on the page.
+<StructureSection load='1wdi' size='340' side='right'caption='[[1wdi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1wdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
-{{STRUCTURE_1wdi|  PDB=1wdi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdi OCA], [https://pdbe.org/1wdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdi RCSB], [https://www.ebi.ac.uk/pdbsum/1wdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdi ProSAT], [https://www.topsan.org/Proteins/RSGI/1wdi TOPSAN]</span></td></tr>
+</table>
-'''Crystal Structure Of TT0907 From Thermus Thermophilus HB8'''
+== Function ==
+[https://www.uniprot.org/uniprot/QUEA_THET2 QUEA_THET2] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA].
+Check<jmol>
-[[Category: Idaka, M.]]
+  <jmolCheckbox>
-[[Category: Kuramitsu, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wdi_consurf.spt"</scriptWhenChecked>
-[[Category: Murayama, K.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Shirouzu, M.]]
+  </jmolCheckbox>
-[[Category: Terada, T.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wdi ConSurf].
-[[Category: Yagi, H.]]
+<div style="clear:both"></div>
-[[Category: Yokoyama, S.]]
+__TOC__
-[[Category: Riken structural genomics/proteomics initiative]]
+</StructureSection>
-[[Category: Rsgi]]
+[[Category: Large Structures]]
-[[Category: Structural genomic]]
+[[Category: Thermus thermophilus]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 13:30:10 2008''
+[[Category: Idaka M]]
+[[Category: Kuramitsu S]]
+[[Category: Murayama K]]
+[[Category: Shirouzu M]]
+[[Category: Terada T]]
+[[Category: Yagi H]]
+[[Category: Yokoyama S]]