1wdi: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 3: Line 3:
<StructureSection load='1wdi' size='340' side='right'caption='[[1wdi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='1wdi' size='340' side='right'caption='[[1wdi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1wdi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WDI FirstGlance]. <br>
<table><tr><td colspan='2'>[[1wdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDI FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdi OCA], [http://pdbe.org/1wdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wdi RCSB], [http://www.ebi.ac.uk/pdbsum/1wdi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdi ProSAT], [http://www.topsan.org/Proteins/RSGI/1wdi TOPSAN]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdi OCA], [https://pdbe.org/1wdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdi RCSB], [https://www.ebi.ac.uk/pdbsum/1wdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdi ProSAT], [https://www.topsan.org/Proteins/RSGI/1wdi TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/QUEA_THET2 QUEA_THET2]] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).  
[https://www.uniprot.org/uniprot/QUEA_THET2 QUEA_THET2] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Idaka, M]]
[[Category: Thermus thermophilus]]
[[Category: Kuramitsu, S]]
[[Category: Idaka M]]
[[Category: Murayama, K]]
[[Category: Kuramitsu S]]
[[Category: Structural genomic]]
[[Category: Murayama K]]
[[Category: Shirouzu, M]]
[[Category: Shirouzu M]]
[[Category: Terada, T]]
[[Category: Terada T]]
[[Category: Yagi, H]]
[[Category: Yagi H]]
[[Category: Yokoyama, S]]
[[Category: Yokoyama S]]
[[Category: Rsgi]]
[[Category: Unknown function]]

Latest revision as of 16:31, 13 March 2024

Crystal Structure Of TT0907 From Thermus Thermophilus HB8Crystal Structure Of TT0907 From Thermus Thermophilus HB8

Structural highlights

1wdi is a 1 chain structure with sequence from Thermus thermophilus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

QUEA_THET2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1wdi, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA