1wdi: Difference between revisions

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-[[Image:1wdi.jpg|left|200px]]
- {{Structure
+==Crystal Structure Of TT0907 From Thermus Thermophilus HB8==
-|PDB= 1wdi |SIZE=350|CAPTION= <scene name='initialview01'>1wdi</scene>, resolution 2.10&Aring;
+<StructureSection load='1wdi' size='340' side='right'caption='[[1wdi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=CIT:CITRIC ACID'>CIT</scene>
+<table><tr><td colspan='2'>[[1wdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WDI FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wdi OCA], [https://pdbe.org/1wdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wdi RCSB], [https://www.ebi.ac.uk/pdbsum/1wdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wdi ProSAT], [https://www.topsan.org/Proteins/RSGI/1wdi TOPSAN]</span></td></tr>
+</table>
-'''Crystal Structure Of TT0907 From Thermus Thermophilus HB8'''
+== Function ==
+[https://www.uniprot.org/uniprot/QUEA_THET2 QUEA_THET2] Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) (By similarity).
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-WDI is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WDI OCA].
+Check<jmol>
-[[Category: Protein complex]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/1wdi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wdi ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermus thermophilus]]
-[[Category: Idaka, M.]]
+[[Category: Idaka M]]
-[[Category: Kuramitsu, S.]]
+[[Category: Kuramitsu S]]
-[[Category: Murayama, K.]]
+[[Category: Murayama K]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Shirouzu M]]
-[[Category: Shirouzu, M.]]
+[[Category: Terada T]]
-[[Category: Terada, T.]]
+[[Category: Yagi H]]
-[[Category: Yagi, H.]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S.]]
-[[Category: CIT]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:55:36 2008''