1rwt: Difference between revisions

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-[[Image:1rwt.png|left|200px]]
-<!--
+==Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution==
-The line below this paragraph, containing "STRUCTURE_1rwt", creates the "Structure Box" on the page.
+<StructureSection load='1rwt' size='340' side='right'caption='[[1rwt]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1rwt]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The November 2004 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Photosystem II''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2004_11 10.2210/rcsb_pdb/mom_2004_11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RWT FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CHL:CHLOROPHYLL+B'>CHL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LUT:(3R,3R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>LUT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NEX:(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL'>NEX</scene>, <scene name='pdbligand=XAT:(3S,5R,6S,3S,5R,6S)-5,6,5,6-DIEPOXY-5,6,5,6-+TETRAHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>XAT</scene></td></tr>
-{{STRUCTURE_1rwt|  PDB=1rwt  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rwt OCA], [https://pdbe.org/1rwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rwt RCSB], [https://www.ebi.ac.uk/pdbsum/1rwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rwt ProSAT]</span></td></tr>
+</table>
-'''Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution'''
+== Function ==
+[https://www.uniprot.org/uniprot/CB2A_SPIOL CB2A_SPIOL] The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
+== Evolutionary Conservation ==
-{{ABSTRACT_15029188}}
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-RWT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The following page contains interesting information on the relation of 1RWT with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb59_1.html Photosystem II]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rw/1rwt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rwt ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Photosystem II]]
-[[Category: Single protein]]
+[[Category: RCSB PDB Molecule of the Month]]
 [[Category: Spinacia oleracea]]
-[[Category: An, X.]]
+[[Category: An X]]
-[[Category: Chang, W.]]
+[[Category: Chang W]]
-[[Category: Gui, L.]]
+[[Category: Gui L]]
-[[Category: Kuang, T.]]
+[[Category: Kuang T]]
-[[Category: Liu, Z.]]
+[[Category: Liu Z]]
-[[Category: Wang, K.]]
+[[Category: Wang K]]
-[[Category: Yan, H.]]
+[[Category: Yan H]]
-[[Category: Zhang, J.]]
+[[Category: Zhang J]]
-[[Category: Light-harvesting complex]]
-[[Category: Membrane protein]]
-[[Category: Plant]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 26 17:56:17 2008''