1rwt: Difference between revisions

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[[Image:1rwt.png|left|200px]]


{{STRUCTURE_1rwt|  PDB=1rwt  |  SCENE=  }}
==Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution==
 
<StructureSection load='1rwt' size='340' side='right'caption='[[1rwt]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
===Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[1rwt]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The November 2004 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Photosystem II''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2004_11 10.2210/rcsb_pdb/mom_2004_11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RWT FirstGlance]. <br>
{{ABSTRACT_PUBMED_15029188}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CHL:CHLOROPHYLL+B'>CHL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LUT:(3R,3R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>LUT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NEX:(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL'>NEX</scene>, <scene name='pdbligand=XAT:(3S,5R,6S,3S,5R,6S)-5,6,5,6-DIEPOXY-5,6,5,6-+TETRAHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>XAT</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rwt OCA], [https://pdbe.org/1rwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rwt RCSB], [https://www.ebi.ac.uk/pdbsum/1rwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rwt ProSAT]</span></td></tr>
[[1rwt]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The November 2004 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Photosystem II''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2004_11 10.2210/rcsb_pdb/mom_2004_11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/CB2A_SPIOL CB2A_SPIOL] The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
<ref group="xtra">PMID:015029188</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rw/1rwt_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rwt ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Photosystem II]]
[[Category: Photosystem II]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Spinacia oleracea]]
[[Category: Spinacia oleracea]]
[[Category: An, X.]]
[[Category: An X]]
[[Category: Chang, W.]]
[[Category: Chang W]]
[[Category: Gui, L.]]
[[Category: Gui L]]
[[Category: Kuang, T.]]
[[Category: Kuang T]]
[[Category: Liu, Z.]]
[[Category: Liu Z]]
[[Category: Wang, K.]]
[[Category: Wang K]]
[[Category: Yan, H.]]
[[Category: Yan H]]
[[Category: Zhang, J.]]
[[Category: Zhang J]]
[[Category: Light-harvesting complex]]
[[Category: Membrane protein]]
[[Category: Photosynthesis]]
[[Category: Plant]]

Latest revision as of 16:29, 13 March 2024

Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom ResolutionCrystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution

Structural highlights

1rwt is a 10 chain structure with sequence from Spinacia oleracea. The November 2004 RCSB PDB Molecule of the Month feature on Photosystem II by David S. Goodsell is 10.2210/rcsb_pdb/mom_2004_11. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.72Å
Ligands:, , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CB2A_SPIOL The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1rwt, resolution 2.72Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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