1nb2: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1nb2.png|left|200px]]
-<!--
+==Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans==
-The line below this paragraph, containing "STRUCTURE_1nb2", creates the "Structure Box" on the page.
+<StructureSection load='1nb2' size='340' side='right'caption='[[1nb2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1nb2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Virgibacillus_halodenitrificans Virgibacillus halodenitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NB2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NB2 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nb2 OCA], [https://pdbe.org/1nb2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nb2 RCSB], [https://www.ebi.ac.uk/pdbsum/1nb2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nb2 ProSAT]</span></td></tr>
-{{STRUCTURE_1nb2|  PDB=1nb2  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q7SIA9_VIRHA Q7SIA9_VIRHA] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nb/1nb2_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nb2 ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans===
+==See Also==
+*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12713952}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12713952 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_12713952}}
-==About this Structure==
-NB2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Virgibacillus_halodenitrificans Virgibacillus halodenitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NB2 OCA].
-==Reference==
-Crystal structure of a nucleoside diphosphate kinase from Bacillus halodenitrificans: coexpression of its activity with a Mn-superoxide dismutase., Chen CJ, Liu MY, Chang T, Chang WC, Wang BC, Le Gall J, J Struct Biol. 2003 May;142(2):247-55. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12713952 12713952]
-[[Category: Nucleoside-diphosphate kinase]]
-[[Category: Single protein]]
 [[Category: Virgibacillus halodenitrificans]]
-[[Category: Chang, T.]]
+[[Category: Chang T]]
-[[Category: Chang, W C.]]
+[[Category: Chang W-C]]
-[[Category: Chen, C J.]]
+[[Category: Chen C-J]]
-[[Category: Gall, J Le.]]
+[[Category: Le Gall J]]
-[[Category: Liu, M Y.]]
+[[Category: Liu M-Y]]
-[[Category: Wang, B C.]]
+[[Category: Wang B-C]]
-[[Category: Bacillus halodenitrifian]]
-[[Category: Nucleoside diphosphate kinase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:54:56 2008''