1n3p: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1n3p.png|left|200px]]
-<!--
+==Pterocarpus angolensis lectin in complex with sucrose==
-The line below this paragraph, containing "STRUCTURE_1n3p", creates the "Structure Box" on the page.
+<StructureSection load='1n3p' size='340' side='right'caption='[[1n3p]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1n3p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N3P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N3P FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
-{{STRUCTURE_1n3p|  PDB=1n3p  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n3p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n3p OCA], [https://pdbe.org/1n3p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n3p RCSB], [https://www.ebi.ac.uk/pdbsum/1n3p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n3p ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8GSD2_PTEAG Q8GSD2_PTEAG]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n3/1n3p_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n3p ConSurf].
+<div style="clear:both"></div>
-===Pterocarpus angolensis lectin in complex with sucrose===
+==See Also==
+*[[Pal|Pal]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12595543}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12595543 is the PubMed ID number.
+[[Category: Pterocarpus angolensis]]
--->
+[[Category: Beeckmans S]]
-{{ABSTRACT_PUBMED_12595543}}
+[[Category: Bouckaert J]]
+[[Category: Buts L]]
-==About this Structure==
+[[Category: De Greve H]]
-Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N3P OCA].
+[[Category: Imberty A]]
+[[Category: Loris R]]
-==Reference==
+[[Category: Read JS]]
-Crystal structure of Pterocarpus angolensis lectin in complex with glucose, sucrose, and turanose., Loris R, Imberty A, Beeckmans S, Van Driessche E, Read JS, Bouckaert J, De Greve H, Buts L, Wyns L, J Biol Chem. 2003 May 2;278(18):16297-303. Epub 2003 Feb 19. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12595543 12595543]
+[[Category: Van Driessche E]]
-[[Category: Beeckmans, S.]]
+[[Category: Wyns L]]
-[[Category: Bouckaert, J.]]
-[[Category: Buts, L.]]
-[[Category: Driessche, E Van.]]
-[[Category: Greve, H De.]]
-[[Category: Imberty, A.]]
-[[Category: Loris, R.]]
-[[Category: Read, J S.]]
-[[Category: Wyns, L.]]
-[[Category: Carbohydrate recognition]]
-[[Category: Lectin]]
-[[Category: Sucrose]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 08:41:40 2008''