1mp9: Difference between revisions

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[[Image:1mp9.png|left|200px]]


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==TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius==
The line below this paragraph, containing "STRUCTURE_1mp9", creates the "Structure Box" on the page.
<StructureSection load='1mp9' size='340' side='right'caption='[[1mp9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1mp9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MP9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mp9 OCA], [https://pdbe.org/1mp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mp9 RCSB], [https://www.ebi.ac.uk/pdbsum/1mp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mp9 ProSAT]</span></td></tr>
{{STRUCTURE_1mp9| PDB=1mp9 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/TBP_SULAC TBP_SULAC] General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mp/1mp9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mp9 ConSurf].
<div style="clear:both"></div>


===TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius===
==See Also==
 
*[[TATA-binding protein 3D structures|TATA-binding protein 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_14725775}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 14725775 is the PubMed ID number.
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{{ABSTRACT_PUBMED_14725775}}
 
==About this Structure==
1MP9 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MP9 OCA].
 
==Reference==
<ref group="xtra">PMID:14725775</ref><references group="xtra"/>
[[Category: Sulfolobus acidocaldarius]]
[[Category: Sulfolobus acidocaldarius]]
[[Category: Clowney, L.]]
[[Category: Clowney L]]
[[Category: Katsuya, Y.]]
[[Category: Katsuya Y]]
[[Category: Kawashima-Ohya, Y.]]
[[Category: Kawashima-Ohya Y]]
[[Category: Koike, H.]]
[[Category: Koike H]]
[[Category: Suzuki, M.]]
[[Category: Suzuki M]]
[[Category: Yamasaki, T.]]
[[Category: Yamasaki T]]
[[Category: Dna-binding protein]]
[[Category: Transcription factor]]
[[Category: Transcription regulation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:53:08 2009''

Latest revision as of 16:27, 13 March 2024

TBP from a mesothermophilic archaeon, Sulfolobus acidocaldariusTBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius

Structural highlights

1mp9 is a 2 chain structure with sequence from Sulfolobus acidocaldarius. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TBP_SULAC General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1mp9, resolution 2.00Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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