1kw9: Difference between revisions

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-{{STRUCTURE_1kw9|  PDB=1kw9  |  SCENE=  }}
-===Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution===
-{{ABSTRACT_PUBMED_12206778}}
-==About this Structure==
+==Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution==
-[[1kw9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eim 1eim]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW9 OCA].
+<StructureSection load='1kw9' size='340' side='right'caption='[[1kw9]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1kw9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eim 1eim]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KW9 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kw9 OCA], [https://pdbe.org/1kw9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kw9 RCSB], [https://www.ebi.ac.uk/pdbsum/1kw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kw9 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BPHC_PSES1 BPHC_PSES1]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kw9_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kw9 ConSurf].
+<div style="clear:both"></div>
-==Reference==
+==See Also==
-<ref group="xtra">PMID:012206778</ref><references group="xtra"/>
+*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-[[Category: Biphenyl-2,3-diol 1,2-dioxygenase]]
+__TOC__
-[[Category: Pseudomonas sp.]]
+</StructureSection>
-[[Category: Fukuda, M.]]
+[[Category: Large Structures]]
-[[Category: Masai, E.]]
+[[Category: Pseudomonas sp. KKS102]]
-[[Category: Nishizaki, T.]]
+[[Category: Fukuda M]]
-[[Category: Nonaka, T.]]
+[[Category: Masai E]]
-[[Category: Sato, N.]]
+[[Category: Nishizaki T]]
-[[Category: Sazaki, G.]]
+[[Category: Nonaka T]]
-[[Category: Senda, T.]]
+[[Category: Sato N]]
-[[Category: Sugimoto, K.]]
+[[Category: Sazaki G]]
-[[Category: Takahashi, Y.]]
+[[Category: Senda T]]
-[[Category: Uragami, Y.]]
+[[Category: Sugimoto K]]
-[[Category: Four time repetitions of the beta-alpha-beta-beta-beta motif]]
+[[Category: Takahashi Y]]
-[[Category: Oxidoreductase]]
+[[Category: Uragami Y]]