1kw9: Difference between revisions

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[[Image:1kw9.png|left|200px]]


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==Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution==
The line below this paragraph, containing "STRUCTURE_1kw9", creates the "Structure Box" on the page.
<StructureSection load='1kw9' size='340' side='right'caption='[[1kw9]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1kw9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eim 1eim]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KW9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
{{STRUCTURE_1kw9| PDB=1kw9 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kw9 OCA], [https://pdbe.org/1kw9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kw9 RCSB], [https://www.ebi.ac.uk/pdbsum/1kw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kw9 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/BPHC_PSES1 BPHC_PSES1]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kw9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kw9 ConSurf].
<div style="clear:both"></div>


===Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution===
==See Also==
 
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_12206778}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12206778 is the PubMed ID number.
[[Category: Pseudomonas sp. KKS102]]
-->
[[Category: Fukuda M]]
{{ABSTRACT_PUBMED_12206778}}
[[Category: Masai E]]
 
[[Category: Nishizaki T]]
==About this Structure==
[[Category: Nonaka T]]
[[1kw9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1eim 1eim]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW9 OCA].
[[Category: Sato N]]
 
[[Category: Sazaki G]]
==Reference==
[[Category: Senda T]]
<ref group="xtra">PMID:012206778</ref><references group="xtra"/>
[[Category: Sugimoto K]]
[[Category: Biphenyl-2,3-diol 1,2-dioxygenase]]
[[Category: Takahashi Y]]
[[Category: Pseudomonas sp.]]
[[Category: Uragami Y]]
[[Category: Fukuda, M.]]
[[Category: Masai, E.]]
[[Category: Nishizaki, T.]]
[[Category: Nonaka, T.]]
[[Category: Sato, N.]]
[[Category: Sazaki, G.]]
[[Category: Senda, T.]]
[[Category: Sugimoto, K.]]
[[Category: Takahashi, Y.]]
[[Category: Uragami, Y.]]
[[Category: Four time repetitions of the beta-alpha-beta-beta-beta motif]]
[[Category: Oxidoreductase]]

Latest revision as of 16:26, 13 March 2024

Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolutionCrystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution

Structural highlights

1kw9 is a 1 chain structure with sequence from Pseudomonas sp. KKS102. This structure supersedes the now removed PDB entry 1eim. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.95Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BPHC_PSES1

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1kw9, resolution 1.95Å

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