1kw8: Difference between revisions

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-[[Image:1kw8.png|left|200px]]
-<!--
+==Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex==
-The line below this paragraph, containing "STRUCTURE_1kw8", creates the "Structure Box" on the page.
+<StructureSection load='1kw8' size='340' side='right'caption='[[1kw8]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1kw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdg 1gdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KW8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
-{{STRUCTURE_1kw8|  PDB=1kw8  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kw8 OCA], [https://pdbe.org/1kw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1kw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kw8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BPHC_PSES1 BPHC_PSES1]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kw8_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kw8 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex===
+==See Also==
+*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12206778}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12206778 is the PubMed ID number.
+[[Category: Pseudomonas sp. KKS102]]
--->
+[[Category: Fukuda M]]
-{{ABSTRACT_PUBMED_12206778}}
+[[Category: Masai E]]
+[[Category: Nishizaki T]]
-==About this Structure==
+[[Category: Nonaka T]]
-[[1kw8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._kks102 Pseudomonas sp. kks102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdg 1gdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW8 OCA].
+[[Category: Sato N]]
+[[Category: Sazaki G]]
-==Reference==
+[[Category: Senda T]]
-<ref group="xtra">PMID:012206778</ref><references group="xtra"/>
+[[Category: Sugimoto K]]
-[[Category: Biphenyl-2,3-diol 1,2-dioxygenase]]
+[[Category: Takahashi Y]]
-[[Category: Pseudomonas sp. kks102]]
+[[Category: Uragami Y]]
-[[Category: Fukuda, M.]]
-[[Category: Masai, E.]]
-[[Category: Nishizaki, T.]]
-[[Category: Nonaka, T.]]
-[[Category: Sato, N.]]
-[[Category: Sazaki, G.]]
-[[Category: Senda, T.]]
-[[Category: Sugimoto, K.]]
-[[Category: Takahashi, Y.]]
-[[Category: Uragami, Y.]]
-[[Category: Four time repetitions of the beta-alpha-beta-beta-beta motif]]
-[[Category: Oxidoreductase]]