1jyb: Difference between revisions

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-[[Image:1jyb.png|left|200px]]
-{{STRUCTURE_1jyb|  PDB=1jyb  |  SCENE=  }}
+==Crystal structure of Rubrerythrin==
+<StructureSection load='1jyb' size='340' side='right'caption='[[1jyb]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-===Crystal structure of Rubrerythrin===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1jyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JYB FirstGlance]. <br>
-{{ABSTRACT_PUBMED_12459910}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jyb OCA], [https://pdbe.org/1jyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jyb RCSB], [https://www.ebi.ac.uk/pdbsum/1jyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jyb ProSAT]</span></td></tr>
-[[1jyb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JYB OCA].
+</table>
+== Function ==
-==Reference==
+[https://www.uniprot.org/uniprot/RUBY_DESVH RUBY_DESVH] May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide (By similarity).
-<ref group="xtra">PMID:012459910</ref><references group="xtra"/>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jy/1jyb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jyb ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Desulfovibrio vulgaris]]
-[[Category: Chang, W R.]]
+[[Category: Large Structures]]
-[[Category: Li, M.]]
+[[Category: Chang WR]]
-[[Category: Liu, M Y.]]
+[[Category: Li M]]
-[[Category: Alpha helix bundle]]
+[[Category: Liu MY]]
-[[Category: Electron transport]]