1ji2: Difference between revisions

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-[[Image:1ji2.png|left|200px]]
-{{STRUCTURE_1ji2|  PDB=1ji2  |  SCENE=  }}
+==Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2==
+<StructureSection load='1ji2' size='340' side='right'caption='[[1ji2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-===Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1ji2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoactinomyces_vulgaris Thermoactinomyces vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JI2 FirstGlance]. <br>
-{{ABSTRACT_PUBMED_12051850}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ji2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ji2 OCA], [https://pdbe.org/1ji2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ji2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ji2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ji2 ProSAT]</span></td></tr>
-[[1ji2]] is a 2 chain structure of [[Alpha-Amylase]] with sequence from [http://en.wikipedia.org/wiki/Thermoactinomyces_vulgaris Thermoactinomyces vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JI2 OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NEPU2_THEVU NEPU2_THEVU] Hydrolyzes pullulan efficiently but only a small amount of starch. Endohydrolysis of 1,4-alpha-glucosidic linkages in pullulan to form panose. Cleaves also (1-6)-alpha-glucosidic linkages to form maltotriose.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1ji2_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ji2 ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Alpha-Amylase|Alpha-Amylase]]
+*[[Amylase 3D structures|Amylase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:012051850</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: Neopullulanase]]
 [[Category: Thermoactinomyces vulgaris]]
-[[Category: Abe, A.]]
+[[Category: Abe A]]
-[[Category: Kaji, A.]]
+[[Category: Kaji A]]
-[[Category: Kamitori, S.]]
+[[Category: Kamitori S]]
-[[Category: Ohtaki, A.]]
+[[Category: Ohtaki A]]
-[[Category: Sakano, Y.]]
+[[Category: Sakano Y]]
-[[Category: Tonozuka, T.]]
+[[Category: Tonozuka T]]
-[[Category: Beta/alpha barrel]]
-[[Category: Hydrolase]]