7lxd: Difference between revisions

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New page: '''Unreleased structure''' The entry 7lxd is ON HOLD Authors: Truong, C.D., Craig, T.A., Cui, G., Botuyan, M.V., Serkasevich, R.A., Chan, K.-Y., Mer, G., Chiu, P.-L., Kumar, R. Descrip...
 
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'''Unreleased structure'''


The entry 7lxd is ON HOLD
==Structure of yeast DNA Polymerase Zeta (apo)==
<StructureSection load='7lxd' size='340' side='right'caption='[[7lxd]], [[Resolution|resolution]] 4.11&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[7lxd]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LXD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LXD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.11&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7lxd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7lxd OCA], [https://pdbe.org/7lxd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7lxd RCSB], [https://www.ebi.ac.uk/pdbsum/7lxd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7lxd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPOZ_YEAST DPOZ_YEAST] Nonessential DNA polymerase. Required for DNA damage induced mutagenesis. Involved in DNA repair, mitochondrial DNA repair and translesion synthesis. Translesion synthesis in S.cerevisiae may use a specialized DNA polymerase that is not required for other DNA replicative processes. Has a role in the bypass of abasic (AP) sites. Highly inefficient in incorporating nucleotides opposite the AP site, but efficiently extends from nucleotides, particularly an A, inserted opposite the lesion.<ref>PMID:11316789</ref> <ref>PMID:16452144</ref> <ref>PMID:2676986</ref> <ref>PMID:8658138</ref>


Authors: Truong, C.D., Craig, T.A., Cui, G., Botuyan, M.V., Serkasevich, R.A., Chan, K.-Y., Mer, G., Chiu, P.-L., Kumar, R.
==See Also==
 
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
Description: Structure of yeast DNA Polymerase Zeta (apo)
== References ==
[[Category: Unreleased Structures]]
<references/>
[[Category: Chiu, P.-L]]
__TOC__
[[Category: Cui, G]]
</StructureSection>
[[Category: Kumar, R]]
[[Category: Large Structures]]
[[Category: Mer, G]]
[[Category: Saccharomyces cerevisiae S288C]]
[[Category: Serkasevich, R.A]]
[[Category: Botuyan MV]]
[[Category: Craig, T.A]]
[[Category: Chan K-Y]]
[[Category: Chan, K.-Y]]
[[Category: Chiu P-L]]
[[Category: Botuyan, M.V]]
[[Category: Craig TA]]
[[Category: Truong, C.D]]
[[Category: Cui G]]
[[Category: Kumar R]]
[[Category: Mer G]]
[[Category: Serkasevich RA]]
[[Category: Truong CD]]

Latest revision as of 18:01, 6 March 2024

Structure of yeast DNA Polymerase Zeta (apo)Structure of yeast DNA Polymerase Zeta (apo)

Structural highlights

7lxd is a 5 chain structure with sequence from Saccharomyces cerevisiae S288C. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 4.11Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DPOZ_YEAST Nonessential DNA polymerase. Required for DNA damage induced mutagenesis. Involved in DNA repair, mitochondrial DNA repair and translesion synthesis. Translesion synthesis in S.cerevisiae may use a specialized DNA polymerase that is not required for other DNA replicative processes. Has a role in the bypass of abasic (AP) sites. Highly inefficient in incorporating nucleotides opposite the AP site, but efficiently extends from nucleotides, particularly an A, inserted opposite the lesion.[1] [2] [3] [4]

See Also

References

  1. ↑ Haracska L, Unk I, Johnson RE, Johansson E, Burgers PM, Prakash S, Prakash L. Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites. Genes Dev. 2001 Apr 15;15(8):945-54. PMID:11316789 doi:10.1101/gad.882301
  2. ↑ Zhang H, Chatterjee A, Singh KK. Saccharomyces cerevisiae polymerase zeta functions in mitochondria. Genetics. 2006 Apr;172(4):2683-8. Epub 2006 Feb 1. PMID:16452144 doi:genetics.105.051029
  3. ↑ Morrison A, Christensen RB, Alley J, Beck AK, Bernstine EG, Lemontt JF, Lawrence CW. REV3, a Saccharomyces cerevisiae gene whose function is required for induced mutagenesis, is predicted to encode a nonessential DNA polymerase. J Bacteriol. 1989 Oct;171(10):5659-67. PMID:2676986 doi:10.1128/jb.171.10.5659-5667.1989
  4. ↑ Nelson JR, Lawrence CW, Hinkle DC. Thymine-thymine dimer bypass by yeast DNA polymerase zeta. Science. 1996 Jun 14;272(5268):1646-9. PMID:8658138 doi:10.1126/science.272.5268.1646

7lxd, resolution 4.11Å

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