5plz: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-'''Unreleased structure'''
-The entry 5plz is ON HOLD
+==PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 157)==
+<StructureSection load='5plz' size='340' side='right'caption='[[5plz]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5plz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5PLZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5PLZ FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.71&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5plz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5plz OCA], [https://pdbe.org/5plz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5plz RCSB], [https://www.ebi.ac.uk/pdbsum/5plz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5plz ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref>
-Authors: Krojer, T.
+==See Also==
+*[[Jumonji domain-containing protein 3D structures|Jumonji domain-containing protein 3D structures]]
-Description: PanDDA analysis group deposition --Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 157)
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
-[[Category: Krojer, T]]
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Arrowsmith CH]]
+[[Category: Bountra C]]
+[[Category: Bradley AR]]
+[[Category: Brandao-Neto J]]
+[[Category: Brennan PE]]
+[[Category: Burgess-Brown N]]
+[[Category: Collins P]]
+[[Category: Cox O]]
+[[Category: Dias A]]
+[[Category: Douangamath A]]
+[[Category: Edwards A]]
+[[Category: Fairhead M]]
+[[Category: Krojer T]]
+[[Category: MacLean E]]
+[[Category: Ng J]]
+[[Category: Oppermann U]]
+[[Category: Pearce NM]]
+[[Category: Renjie Z]]
+[[Category: Sethi R]]
+[[Category: Szykowska A]]
+[[Category: Talon R]]
+[[Category: Vollmar M]]
+[[Category: Wright N]]
+[[Category: Von Delft F]]