5icd: Difference between revisions

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New page: left|200px<br /><applet load="5icd" size="450" color="white" frame="true" align="right" spinBox="true" caption="5icd, resolution 2.5Å" /> '''REGULATION OF AN ENZY...
 
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[[Image:5icd.gif|left|200px]]<br /><applet load="5icd" size="450" color="white" frame="true" align="right" spinBox="true"
caption="5icd, resolution 2.5&Aring;" />
'''REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE'''<br />


==Overview==
==REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE==
The isocitrate dehydrogenase of Escherichia coli is an example of a, ubiquitous class of enzymes that are regulated by covalent modification., In the three-dimensional structure of the enzyme-substrate complex, isocitrate forms a hydrogen bond with Ser113, the site of regulatory, phosphorylation. The structures of Asp113 and Glu113 mutants, which mimic, the inactivation of the enzyme by phosphorylation, show minimal, conformational changes from wild type, as in the phosphorylated enzyme., Calculations based on observed structures suggest that the change in, electrostatic potential when a negative charge is introduced either by, phosporylation or site-directed mutagenesis is sufficient to inactivate, the enzyme. Thus, direct interaction at a ligand binding site is an, alternative mechanism to induced conformational changes from an allosteric, site in the regulation of protein activity by phosphorylation.
<StructureSection load='5icd' size='340' side='right'caption='[[5icd]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5icd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ICD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ICD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ICT:ISOCITRIC+ACID'>ICT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5icd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5icd OCA], [https://pdbe.org/5icd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5icd RCSB], [https://www.ebi.ac.uk/pdbsum/5icd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5icd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/IDH_ECOLI IDH_ECOLI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/5icd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5icd ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
5ICD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with MG and ICT as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Isocitrate_dehydrogenase_(NADP(+)) Isocitrate dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.42 1.1.1.42] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=5ICD OCA].
*[[Isocitrate dehydrogenase 3D structures|Isocitrate dehydrogenase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Regulation of an enzyme by phosphorylation at the active site., Hurley JH, Dean AM, Sohl JL, Koshland DE Jr, Stroud RM, Science. 1990 Aug 31;249(4972):1012-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=2204109 2204109]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Isocitrate dehydrogenase (NADP(+))]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Dean AM]]
[[Category: Dean, A.M.]]
[[Category: Hurley JH]]
[[Category: Hurley, J.H.]]
[[Category: Koshlandjunior DE]]
[[Category: Koshlandjunior, D.E.]]
[[Category: Sohl JL]]
[[Category: Sohl, J.L.]]
[[Category: Stroud RM]]
[[Category: Stroud, R.M.]]
[[Category: ICT]]
[[Category: MG]]
[[Category: oxidoreductase (nad(a)-choh(d))]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:34:09 2007''

Latest revision as of 15:34, 6 March 2024

REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITEREGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE

Structural highlights

5icd is a 1 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

IDH_ECOLI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

5icd, resolution 2.50Å

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