5bv5: Difference between revisions

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 ==Structure of CYP119 with T213A and C317H mutations==
-<StructureSection load='5bv5' size='340' side='right' caption='[[5bv5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+<StructureSection load='5bv5' size='340' side='right'caption='[[5bv5]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5bv5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BV5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BV5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5bv5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BV5 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PIM:4-PHENYL-1H-IMIDAZOLE'>PIM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bv5 OCA], [http://pdbe.org/5bv5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bv5 RCSB], [http://www.ebi.ac.uk/pdbsum/5bv5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bv5 ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PIM:4-PHENYL-1H-IMIDAZOLE'>PIM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bv5 OCA], [https://pdbe.org/5bv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bv5 RCSB], [https://www.ebi.ac.uk/pdbsum/5bv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bv5 ProSAT]</span></td></tr>
 </table>
-<div style="background-color:#fffaf0;">
+== Function ==
-== Publication Abstract from PubMed ==
+[https://www.uniprot.org/uniprot/CP119_SULAC CP119_SULAC] The endogenous substrate is not known. In vitro, catalyzes the H(2)O(2)-dependent epoxidation of styrene, cis-beta-methylstyrene, and cis-stilbene with retention of stereochemistry. Is able to use cumene hydroperoxide (CHP) or tert-butyl hydroperoxide (TBHP) instead of H(2)O(2) as the electron acceptor. Can also hydroxylate fatty acids such as lauric acid.<ref>PMID:10799487</ref> <ref>PMID:12010041</ref> <ref>PMID:18157853</ref>
-Almost all known members of the cytochrome P450 (CYP) superfamily conserve a key cysteine residue that coordinates the heme iron. Although mutation of this residue abolishes monooxygenase activity, recent work has shown that mutation to either serine or histidine unlocks non-natural carbene- and nitrene-transfer activities. Here we present the first crystal structure of a histidine-ligated P450. The T213A/C317H variant of the thermostable CYP119 from Sulfolobus acidocaldarius maintains heme iron coordination through the introduced ligand, an interaction that is accompanied by large changes in the overall protein structure. We also find that the axial cysteine C317 may be substituted with any other amino acid without abrogating folding and heme cofactor incorporation. Several of the axial mutants display unusual spectral features, suggesting that they have active sites with unique steric and electronic properties. These novel, highly stable enzyme active sites will be fruitful starting points for investigations of non-natural P450 catalysis and mechanisms.
-Structural Adaptability Facilitates Histidine Heme Ligation in a Cytochrome P450.,McIntosh JA, Heel T, Buller AR, Chio L, Arnold FH J Am Chem Soc. 2015 Nov 4;137(43):13861-5. doi: 10.1021/jacs.5b07107. Epub 2015, Sep 23. PMID:26299431<ref>PMID:26299431</ref>
+==See Also==
+*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 5bv5" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Atcc 35091]]
+[[Category: Large Structures]]
-[[Category: Arnold, F H]]
+[[Category: Saccharolobus solfataricus]]
-[[Category: Buller, A R]]
+[[Category: Arnold FH]]
-[[Category: Heel, T]]
+[[Category: Buller AR]]
-[[Category: McIntosh, J A]]
+[[Category: Heel T]]
-[[Category: Cytochrome]]
+[[Category: McIntosh JA]]
-[[Category: Heme]]
-[[Category: Oxidoreductase]]
-[[Category: P420]]
-[[Category: P450]]