4ry0: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
m Protected "4ry0" [edit=sysop:move=sysop]
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==
==Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose==
<StructureSection load='4ry0' size='340' side='right' caption='[[4ry0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='4ry0' size='340' side='right'caption='[[4ry0]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4ry0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_etli_CFN_42 Rhizobium etli CFN 42]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RY0 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [http://www.ebi.ac.uk/pdbsum/4ry0 PDBsum]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ry0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ry0 OCA], [https://pdbe.org/4ry0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ry0 RCSB], [https://www.ebi.ac.uk/pdbsum/4ry0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ry0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/APIBP_RHIEC APIBP_RHIEC] Part of an ABC transporter complex involved in D-apiose import (Probable). Binds D-apiose, D-ribose and D-ribulose (PubMed:29867142).<ref>PMID:29867142</ref> <ref>PMID:29867142</ref>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Almo, S C]]
[[Category: Large Structures]]
[[Category: Attonito, J D]]
[[Category: Rhizobium etli CFN 42]]
[[Category: Bhosle, R]]
[[Category: Al Obaidi N]]
[[Category: Chamala, S]]
[[Category: Almo SC]]
[[Category: Chowdhury, S]]
[[Category: Attonito JD]]
[[Category: Efi, Enzyme Function Initiative]]
[[Category: Bhosle R]]
[[Category: Gerlt, J A]]
[[Category: Chamala S]]
[[Category: Glenn, A Scott]]
[[Category: Chowdhury S]]
[[Category: Hillerich, B]]
[[Category: Gerlt JA]]
[[Category: Lafleur, J]]
[[Category: Hillerich B]]
[[Category: Love, J]]
[[Category: Lafleur J]]
[[Category: Morisco, L L]]
[[Category: Love J]]
[[Category: Obaidi, N Al]]
[[Category: Morisco LL]]
[[Category: Patskovsky, Y]]
[[Category: Patskovsky Y]]
[[Category: Siede, R D]]
[[Category: Scott Glenn A]]
[[Category: Toro, R]]
[[Category: Siedel RD]]
[[Category: Wasserman, S R]]
[[Category: Toro R]]
[[Category: Whalen, K L]]
[[Category: Wasserman SR]]
[[Category: Efi]]
[[Category: Whalen KL]]
[[Category: Enzyme function initiative]]
[[Category: Structural genomic]]
[[Category: Sugar transporter]]
[[Category: Transport protein]]

Latest revision as of 15:56, 1 March 2024

Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-riboseCrystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose

Structural highlights

4ry0 is a 1 chain structure with sequence from Rhizobium etli CFN 42. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

APIBP_RHIEC Part of an ABC transporter complex involved in D-apiose import (Probable). Binds D-apiose, D-ribose and D-ribulose (PubMed:29867142).[1] [2]

References

  1. ↑ Carter MS, Zhang X, Huang H, Bouvier JT, Francisco BS, Vetting MW, Al-Obaidi N, Bonanno JB, Ghosh A, Zallot RG, Andersen HM, Almo SC, Gerlt JA. Functional assignment of multiple catabolic pathways for D-apiose. Nat Chem Biol. 2018 Jul;14(7):696-705. doi: 10.1038/s41589-018-0067-7. Epub 2018 , Jun 4. PMID:29867142 doi:http://dx.doi.org/10.1038/s41589-018-0067-7
  2. ↑ Carter MS, Zhang X, Huang H, Bouvier JT, Francisco BS, Vetting MW, Al-Obaidi N, Bonanno JB, Ghosh A, Zallot RG, Andersen HM, Almo SC, Gerlt JA. Functional assignment of multiple catabolic pathways for D-apiose. Nat Chem Biol. 2018 Jul;14(7):696-705. doi: 10.1038/s41589-018-0067-7. Epub 2018 , Jun 4. PMID:29867142 doi:http://dx.doi.org/10.1038/s41589-018-0067-7

4ry0, resolution 1.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=4ry0&oldid=4076489"