4nvg: Difference between revisions

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 ==Predicting protein conformational response in prospective ligand discovery==
-<StructureSection load='4nvg' size='340' side='right' caption='[[4nvg]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
+<StructureSection load='4nvg' size='340' side='right'caption='[[4nvg]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4nvg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NVG FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4nvg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_RM11-1a Saccharomyces cerevisiae RM11-1a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NVG FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2N9:ETHYL+4-AMINOQUINOLINE-3-CARBOXYLATE'>2N9</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.742&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nva|4nva]], [[4nvb|4nvb]], [[4nvc|4nvc]], [[4nvd|4nvd]], [[4nve|4nve]], [[4nvf|4nvf]], [[4nvh|4nvh]], [[4nvi|4nvi]], [[4nvj|4nvj]], [[4nvk|4nvk]], [[4nvl|4nvl]], [[4nvm|4nvm]], [[4nvn|4nvn]], [[4nvo|4nvo]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2N9:ETHYL+4-AMINOQUINOLINE-3-CARBOXYLATE'>2N9</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCP1 CCP CPO YKR066C, SCRG_04081 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=285006 Baker's yeast])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvg OCA], [https://pdbe.org/4nvg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nvg RCSB], [https://www.ebi.ac.uk/pdbsum/4nvg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nvg ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nvg RCSB], [http://www.ebi.ac.uk/pdbsum/4nvg PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/B3LRE1_YEAS1 B3LRE1_YEAS1]
 ==See Also==
-*[[Cytochrome c peroxidase|Cytochrome c peroxidase]]
+*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Baker's yeast]]
+[[Category: Large Structures]]
-[[Category: Fischer, M]]
+[[Category: Saccharomyces cerevisiae RM11-1a]]
-[[Category: Fraser, J S]]
+[[Category: Fischer M]]
-[[Category: Boltzmann weight]]
+[[Category: Fraser JS]]
-[[Category: Dynamic]]
-[[Category: Energy penalty]]
-[[Category: Flexibility]]
-[[Category: Flexible docking]]
-[[Category: Ligand binding]]
-[[Category: Loop]]
-[[Category: Model system]]
-[[Category: Occupancy]]
-[[Category: Oxidoreductase]]
-[[Category: Side-chain]]