4n6e: Difference between revisions

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==Crystal structure of Amycolatopsis orientalis BexX/CysO complex==
==Crystal structure of Amycolatopsis orientalis BexX/CysO complex==
<StructureSection load='4n6e' size='340' side='right' caption='[[4n6e]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='4n6e' size='340' side='right'caption='[[4n6e]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4n6e]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N6E FirstGlance]. <br>
<table><tr><td colspan='2'>[[4n6e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Amycolatopsis_orientalis_HCCB10007 Amycolatopsis orientalis HCCB10007] and [https://en.wikipedia.org/wiki/Amycolatopsis_orientalis_subsp._vinearia Amycolatopsis orientalis subsp. vinearia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N6E FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n6f|4n6f]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n6e RCSB], [http://www.ebi.ac.uk/pdbsum/4n6e PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6e OCA], [https://pdbe.org/4n6e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n6e RCSB], [https://www.ebi.ac.uk/pdbsum/4n6e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n6e ProSAT]</span></td></tr>
<table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/D7RFL7_AMYOR D7RFL7_AMYOR]
Sulphur is an essential element for life and is ubiquitous in living systems. Yet how the sulphur atom is incorporated into many sulphur-containing secondary metabolites is poorly understood. For bond formation between carbon and sulphur in primary metabolites, the major ionic sulphur sources are the persulphide and thiocarboxylate groups on sulphur-carrier (donor) proteins. Each group is post-translationally generated through the action of a specific activating enzyme. In all reported bacterial cases, the gene encoding the enzyme that catalyses the carbon-sulphur bond formation reaction and that encoding the cognate sulphur-carrier protein exist in the same gene cluster. To study the production of the 2-thiosugar moiety in BE-7585A, an antibiotic from Amycolatopsis orientalis, we identified a putative 2-thioglucose synthase, BexX, whose protein sequence and mode of action seem similar to those of ThiG, the enzyme that catalyses thiazole formation in thiamine biosynthesis. However, no gene encoding a sulphur-carrier protein could be located in the BE-7585A cluster. Subsequent genome sequencing uncovered a few genes encoding sulphur-carrier proteins that are probably involved in the biosynthesis of primary metabolites but only one activating enzyme gene in the A. orientalis genome. Further experiments showed that this activating enzyme can adenylate each of these sulphur-carrier proteins and probably also catalyses the subsequent thiolation, through its rhodanese domain. A proper combination of these sulphur-delivery systems is effective for BexX-catalysed 2-thioglucose production. The ability of BexX to selectively distinguish sulphur-carrier proteins is given a structural basis using X-ray crystallography. This study is, to our knowledge, the first complete characterization of thiosugar formation in nature and also demonstrates the receptor promiscuity of the A. orientalis sulphur-delivery system. Our results also show that co-opting the sulphur-delivery machinery of primary metabolism for the biosynthesis of sulphur-containing natural products is probably a general strategy found in nature.
 
Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.,Sasaki E, Zhang X, Sun HG, Lu MY, Liu TL, Ou A, Li JY, Chen YH, Ealick SE, Liu HW Nature. 2014 Jun 19;509(7505):427-31. doi: 10.1038/nature13256. Epub 2014 May 11. PMID:24814342<ref>PMID:24814342</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Chen, Y.]]
[[Category: Amycolatopsis orientalis HCCB10007]]
[[Category: Ealick, S E.]]
[[Category: Amycolatopsis orientalis subsp. vinearia]]
[[Category: Kinsland, C.]]
[[Category: Large Structures]]
[[Category: Li, J.]]
[[Category: Chen Y]]
[[Category: Liu, H.]]
[[Category: Ealick SE]]
[[Category: Liu, T.]]
[[Category: Kinsland C]]
[[Category: Lu, M J.]]
[[Category: Li J]]
[[Category: Ou, A.]]
[[Category: Liu H]]
[[Category: Sasaki, E.]]
[[Category: Liu T]]
[[Category: Sun, H G.]]
[[Category: Lu MJ]]
[[Category: Zhang, X.]]
[[Category: Ou A]]
[[Category: Zhang, Y.]]
[[Category: Sasaki E]]
[[Category: Alpha beta barrel]]
[[Category: Sun HG]]
[[Category: Bexx]]
[[Category: Zhang X]]
[[Category: Cyso]]
[[Category: Zhang Y]]
[[Category: Lyase-biosynthetic protein complex]]
[[Category: Protein-protein complex]]
[[Category: Sulfur carrier protein]]
[[Category: Thiosugar synthase]]

Latest revision as of 15:31, 1 March 2024

Crystal structure of Amycolatopsis orientalis BexX/CysO complexCrystal structure of Amycolatopsis orientalis BexX/CysO complex

Structural highlights

4n6e is a 2 chain structure with sequence from Amycolatopsis orientalis HCCB10007 and Amycolatopsis orientalis subsp. vinearia. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

D7RFL7_AMYOR

4n6e, resolution 2.60Å

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OCA
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