4ja4: Difference between revisions

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 ==Inward open conformation of the xylose transporter XylE from E. coli==
-<StructureSection load='4ja4' size='340' side='right' caption='[[4ja4]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
+<StructureSection load='4ja4' size='340' side='right'caption='[[4ja4]], [[Resolution|resolution]] 4.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4ja4]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JA4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JA4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4ja4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JA4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JA4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ja3|4ja3]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xylE, b4031, JW3991 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ja4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ja4 OCA], [https://pdbe.org/4ja4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ja4 RCSB], [https://www.ebi.ac.uk/pdbsum/4ja4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ja4 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ja4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ja4 OCA], [http://pdbe.org/4ja4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ja4 RCSB], [http://www.ebi.ac.uk/pdbsum/4ja4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ja4 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/XYLE_ECOLI XYLE_ECOLI]] Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).
+[https://www.uniprot.org/uniprot/XYLE_ECOLI XYLE_ECOLI] Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Here we present two structures of the major facilitator (MFS) xylose transporter XylE from Escherichia coli in inward open and partially occluded inward open conformations. These structures provide key information about the transport cycle of XylE and the closely related human GLUT transporters. This is, to our knowledge, the first MFS transporter structure determined in more than one conformational state, which may establish XylE as an important MFS model protein.
-Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters.,Quistgaard EM, Low C, Moberg P, Tresaugues L, Nordlund P Nat Struct Mol Biol. 2013 Jun;20(6):766-8. doi: 10.1038/nsmb.2569. Epub 2013 Apr , 28. PMID:23624861<ref>PMID:23624861</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 4ja4" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Symporter|Symporter]]
+*[[Symporter 3D structures|Symporter 3D structures]]
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Ecoli]]
+[[Category: Escherichia coli K-12]]
-[[Category: Low, C]]
+[[Category: Large Structures]]
-[[Category: Moberg, P]]
+[[Category: Low C]]
-[[Category: Nordlund, P]]
+[[Category: Moberg P]]
-[[Category: Quistgaard, E M]]
+[[Category: Nordlund P]]
-[[Category: Tresaugues, L]]
+[[Category: Quistgaard EM]]
-[[Category: Mfs general substrate transporter]]
+[[Category: Tresaugues L]]
-[[Category: Transport protein]]
-[[Category: Xylose transporter]]