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==Leanyer orthobunyavirus nucleoprotein-ssRNA complex==
==Leanyer orthobunyavirus nucleoprotein-ssRNA complex==
<StructureSection load='4j1g' size='340' side='right' caption='[[4j1g]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
<StructureSection load='4j1g' size='340' side='right'caption='[[4j1g]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4j1g]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Leanyer_virus Leanyer virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J1G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4J1G FirstGlance]. <br>
<table><tr><td colspan='2'>[[4j1g]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Leanyer_virus Leanyer virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J1G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4J1G FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4j1j|4j1j]]</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.789&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4j1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j1g OCA], [http://pdbe.org/4j1g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4j1g RCSB], [http://www.ebi.ac.uk/pdbsum/4j1g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4j1g ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4j1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j1g OCA], [https://pdbe.org/4j1g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4j1g RCSB], [https://www.ebi.ac.uk/pdbsum/4j1g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4j1g ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/F2WAD7_9VIRU F2WAD7_9VIRU]
Negative-stranded RNA viruses cover their genome with nucleoprotein (N) to protect it from the human innate immune system. Abrogation of the function of N offers a unique opportunity to combat the spread of the viruses. Here, we describe a unique fold of N from Leanyer virus (LEAV, Orthobunyavirus genus, Bunyaviridae family) in complex with single-stranded RNA refined to 2.78 A resolution as well as a 2.68 A resolution structure of LEAV N-ssDNA complex. LEAV N is made up of an N- and a C-terminal lobe, with the RNA binding site located at the junction of these lobes. The LEAV N tetramer binds a 44-nucleotide-long single-stranded RNA chain. Hence, oligomerization of N is essential for encapsidation of the entire genome and is accomplished by using extensions at the N and C terminus. Molecular details of the oligomerization of N are illustrated in the structure where a circular ring-like tertiary assembly of a tetramer of LEAV N is observed tethering the RNA in a positively charged cavity running along the inner edge. Hydrogen bonds between N and the C2 hydroxyl group of ribose sugar explain the specificity of LEAV N for RNA over DNA. In addition, base-specific hydrogen bonds suggest that some regions of RNA bind N more tightly than others. Hinge movements around F20 and V125 assist in the reversal of capsidation during transcription and replication of the virus. Electron microscopic images of the ribonucleoprotein complexes of LEAV N reveal a filamentous assembly similar to those found in phleboviruses.
 
Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation.,Niu F, Shaw N, Wang YE, Jiao L, Ding W, Li X, Zhu P, Upur H, Ouyang S, Cheng G, Liu ZJ Proc Natl Acad Sci U S A. 2013 May 28;110(22):9054-9. doi:, 10.1073/pnas.1300035110. Epub 2013 Apr 8. PMID:23569220<ref>PMID:23569220</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4j1g" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Nucleoprotein|Nucleoprotein]]
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Leanyer virus]]
[[Category: Leanyer virus]]
[[Category: Cheng, G]]
[[Category: Cheng G]]
[[Category: Ding, W]]
[[Category: Ding W]]
[[Category: Jiao, L]]
[[Category: Jiao L]]
[[Category: Li, X]]
[[Category: Li X]]
[[Category: Liu, Z J]]
[[Category: Liu ZJ]]
[[Category: Niu, F]]
[[Category: Niu F]]
[[Category: Ouyang, S]]
[[Category: Ouyang S]]
[[Category: Shaw, N]]
[[Category: Shaw N]]
[[Category: Upur, H]]
[[Category: Upur H]]
[[Category: Wang, Y]]
[[Category: Wang Y]]
[[Category: Zhu, P]]
[[Category: Zhu P]]
[[Category: Nucleocapsid protein]]
[[Category: Protein-rna complex]]
[[Category: Rna binding]]
[[Category: Rna binding protein]]
[[Category: Viral protein-rna complex]]

Latest revision as of 15:00, 1 March 2024

Leanyer orthobunyavirus nucleoprotein-ssRNA complexLeanyer orthobunyavirus nucleoprotein-ssRNA complex

Structural highlights

4j1g is a 5 chain structure with sequence from Leanyer virus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.789Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

F2WAD7_9VIRU

See Also

4j1g, resolution 2.79Å

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