4du4: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:4du4.png|left|200px]]
-{{STRUCTURE_4du4|  PDB=4du4  |  SCENE=  }}
+==RB69 DNA Polymerase Ternary Complex with dATP Opposite dT with 3-Deaza-adenine at the N-3 Position of Primer Strand==
+<StructureSection load='4du4' size='340' side='right'caption='[[4du4]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4du4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DU4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DU4 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4DU:1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-1H-IMIDAZO[4,5-C]PYRIDIN-4-AMINE'>4DU</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4du4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4du4 OCA], [https://pdbe.org/4du4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4du4 RCSB], [https://www.ebi.ac.uk/pdbsum/4du4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4du4 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
-===RB69 DNA Polymerase Ternary Complex with dATP Opposite dT with 3-Deaza-adenine at the N-3 Position of Primer Strand===
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-{{ABSTRACT_PUBMED_22571765}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Escherichia phage RB69]]
-[[4du4]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb69 Enterobacteria phage rb69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DU4 OCA].
+[[Category: Large Structures]]
+[[Category: Konigsberg WH]]
-==Reference==
+[[Category: Wang J]]
-<ref group="xtra">PMID:022571765</ref><references group="xtra"/>
+[[Category: Xia S]]
-[[Category: DNA-directed DNA polymerase]]
-[[Category: Enterobacteria phage rb69]]
-[[Category: Konigsberg, W H.]]
-[[Category: Wang, J.]]
-[[Category: Xia, S.]]
-[[Category: 3-deaza-adenine]]
-[[Category: Datp/dt]]
-[[Category: Transferase-dna complex]]