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==Co-crystal structure of K72E variant of rat polymerase beta: Enzyme-DNA binary complex== | ==Co-crystal structure of K72E variant of rat polymerase beta: Enzyme-DNA binary complex== | ||
<StructureSection load='3v7k' size='340' side='right' caption='[[3v7k]], [[Resolution|resolution]] 2.27Å' scene=''> | <StructureSection load='3v7k' size='340' side='right'caption='[[3v7k]], [[Resolution|resolution]] 2.27Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3v7k]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3v7k]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V7K FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.271Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |||
<tr id=' | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7k OCA], [https://pdbe.org/3v7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v7k RCSB], [https://www.ebi.ac.uk/pdbsum/3v7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v7k ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/DPOLB_RAT DPOLB_RAT] Repair polymerase that plays a key role in base-excision repair. Has 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity that removes the 5' sugar phosphate and also acts as a DNA polymerase that adds one nucleotide to the 3' end of the arising single-nucleotide gap. Conducts 'gap-filling' DNA synthesis in a stepwise distributive fashion rather than in a processive fashion as for other DNA polymerases. | ||
==See Also== | ==See Also== | ||
*[[DNA polymerase|DNA polymerase]] | *[[DNA polymerase 3D structures|DNA polymerase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | |||
[[Category: Rattus norvegicus]] | [[Category: Rattus norvegicus]] | ||
[[Category: Jaeger | [[Category: Jaeger J]] | ||
[[Category: Rangarajan | [[Category: Rangarajan S]] | ||
Latest revision as of 13:33, 1 March 2024
Co-crystal structure of K72E variant of rat polymerase beta: Enzyme-DNA binary complexCo-crystal structure of K72E variant of rat polymerase beta: Enzyme-DNA binary complex
Structural highlights
FunctionDPOLB_RAT Repair polymerase that plays a key role in base-excision repair. Has 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity that removes the 5' sugar phosphate and also acts as a DNA polymerase that adds one nucleotide to the 3' end of the arising single-nucleotide gap. Conducts 'gap-filling' DNA synthesis in a stepwise distributive fashion rather than in a processive fashion as for other DNA polymerases. See Also |
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