3u2d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3u2d.png|left|200px]]
-<!--
+==S. aureus GyrB ATPase domain in complex with small molecule inhibitor==
-The line below this paragraph, containing "STRUCTURE_3u2d", creates the "Structure Box" on the page.
+<StructureSection load='3u2d' size='340' side='right'caption='[[3u2d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3u2d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3U2D FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=08B:4-BROMO-5-METHYL-N-[1-(3-NITROPYRIDIN-2-YL)PIPERIDIN-4-YL]-1H-PYRROLE-2-CARBOXAMIDE'>08B</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_3u2d|  PDB=3u2d  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3u2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u2d OCA], [https://pdbe.org/3u2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3u2d RCSB], [https://www.ebi.ac.uk/pdbsum/3u2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3u2d ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GYRB_STAAU GYRB_STAAU] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01898]
-===S. aureus GyrB ATPase domain in complex with small molecule inhibitor===
+==See Also==
+*[[Gyrase 3D Structures|Gyrase 3D Structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_22183167}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 22183167 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_22183167}}
-==About this Structure==
-[[3u2d]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U2D OCA].
-==Reference==
-<ref group="xtra">PMID:022183167</ref><references group="xtra"/>
 [[Category: Staphylococcus aureus]]
-[[Category: Boriack-Sjodin, P A.]]
+[[Category: Boriack-Sjodin PA]]
-[[Category: Eakin, A E.]]
+[[Category: Eakin AE]]
-[[Category: Prince, D B.]]
+[[Category: Prince DB]]
-[[Category: Sherer, B A.]]
+[[Category: Sherer BA]]
-[[Category: Antimicrobial]]
-[[Category: Atp-binding]]
-[[Category: Isomerase-isomerase inhibitor complex]]
-[[Category: Protein-inhibitor complex]]
-[[Category: Structure-based drug design]]