3pgk: Difference between revisions

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-[[Image:3pgk.png|left|200px]]
-{{STRUCTURE_3pgk|  PDB=3pgk  |  SCENE=  }}
+==The structure of yeast phosphoglycerate kinase at 0.25 nm resolution==
+<StructureSection load='3pgk' size='340' side='right'caption='[[3pgk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-===The structure of yeast phosphoglycerate kinase at 0.25 nm resolution===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3pgk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pgk 1pgk]. The February 2004 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''The Glycolytic Enzymes''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2004_2 10.2210/rcsb_pdb/mom_2004_2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PGK FirstGlance]. <br>
-{{ABSTRACT_PUBMED_6765200}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3PG:3-PHOSPHOGLYCERIC+ACID'>3PG</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pgk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pgk OCA], [https://pdbe.org/3pgk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pgk RCSB], [https://www.ebi.ac.uk/pdbsum/3pgk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pgk ProSAT]</span></td></tr>
-[[3pgk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1pgk 1pgk]. The February 2004 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''The Glycolytic Enzymes''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2004_2 10.2210/rcsb_pdb/mom_2004_2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGK OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PGK_YEAST PGK_YEAST]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/3pgk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3pgk ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Phosphoglycerate Kinase|Phosphoglycerate Kinase]]
+*[[Phosphoglycerate kinase 3D structures|Phosphoglycerate kinase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:006765200</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: Phosphoglycerate kinase]]
 [[Category: RCSB PDB Molecule of the Month]]
 [[Category: Saccharomyces cerevisiae]]
 [[Category: The Glycolytic Enzymes]]
-[[Category: Shaw, P J.]]
+[[Category: Shaw PJ]]
-[[Category: Walker, N P.]]
+[[Category: Walker NP]]
-[[Category: Watson, H C.]]
+[[Category: Watson HC]]
-[[Category: Transferase]]