3oah: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6==
==Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6==
<StructureSection load='3oah' size='340' side='right' caption='[[3oah]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='3oah' size='340' side='right'caption='[[3oah]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3oah]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OAH FirstGlance]. <br>
<table><tr><td colspan='2'>[[3oah]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_-_6 Adeno-associated virus - 6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OAH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OAH FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=OAH:9-(2-DEOXY-5-O-PHOSPHONO-ALPHA-D-THREO-PENTOFURANOSYL)-9H-PURIN-6-AMINE'>OAH</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oah OCA], [http://pdbe.org/3oah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oah RCSB], [http://www.ebi.ac.uk/pdbsum/3oah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oah ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYT:6-AMINOPYRIMIDIN-2(1H)-ONE'>CYT</scene>, <scene name='pdbligand=OAH:9-(2-DEOXY-5-O-PHOSPHONO-ALPHA-D-THREO-PENTOFURANOSYL)-9H-PURIN-6-AMINE'>OAH</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oah OCA], [https://pdbe.org/3oah PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oah RCSB], [https://www.ebi.ac.uk/pdbsum/3oah PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oah ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/O56137_9VIRU O56137_9VIRU]
The three-dimensional structure of adeno-associated virus (AAV) serotype 6 (AAV6) was determined using cryo-electron microscopy and image reconstruction and using X-ray crystallography to 9.7- and 3.0-A resolution, respectively. The AAV6 capsid contains a highly conserved, eight-stranded (betaB to betaI) beta-barrel core and large loop regions between the strands which form the capsid surface, as observed in other AAV structures. The loops show conformational variation compared to other AAVs, consistent with previous reports that amino acids in these loop regions are involved in differentiating AAV receptor binding, transduction efficiency, and antigenicity properties. Toward structure-function annotation of AAV6 with respect to its unique dual glycan receptor (heparan sulfate and sialic acid) utilization for cellular recognition, and its enhanced lung epithelial transduction compared to other AAVs, the capsid structure was compared to that of AAV1, which binds sialic acid and differs from AAV6 in only 6 out of 736 amino acids. Five of these residues are located at or close to the icosahedral 3-fold axis of the capsid, thereby identifying this region as imparting important functions, such as receptor attachment and transduction phenotype. Two of the five observed amino acids are located in the capsid interior, suggesting that differential AAV infection properties are also controlled by postentry intracellular events. Density ordered inside the capsid, under the 3-fold axis in a previously reported, conserved AAV DNA binding pocket, was modeled as a nucleotide and a base, further implicating this capsid region in AAV genome recognition and/or stabilization.


Structural characterization of the dual glycan binding adeno-associated virus serotype 6.,Ng R, Govindasamy L, Gurda BL, McKenna R, Kozyreva OG, Samulski RJ, Parent KN, Baker TS, Agbandje-McKenna M J Virol. 2010 Dec;84(24):12945-57. Epub 2010 Sep 22. PMID:20861247<ref>PMID:20861247</ref>
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3oah" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Agbandje-McKenna, M]]
[[Category: Adeno-associated virus - 6]]
[[Category: Ng, R]]
[[Category: Large Structures]]
[[Category: Beta-barrel]]
[[Category: Agbandje-McKenna M]]
[[Category: Icosahedral virus]]
[[Category: Ng R]]
[[Category: Ssdna]]
[[Category: Ssdna binding]]
[[Category: Virus]]

Latest revision as of 13:33, 21 February 2024

Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6

Structural highlights

3oah is a 1 chain structure with sequence from Adeno-associated virus - 6. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

O56137_9VIRU

See Also

3oah, resolution 3.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3oah&oldid=4066831"