3m2d: Difference between revisions

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-[[Image:3m2d.png|left|200px]]
-{{STRUCTURE_3m2d|  PDB=3m2d  |  SCENE=  }}
+==Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate==
+<StructureSection load='3m2d' size='340' side='right'caption='[[3m2d]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-===Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3m2d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M2D FirstGlance]. <br>
-{{ABSTRACT_PUBMED_20230048}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m2d OCA], [https://pdbe.org/3m2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m2d RCSB], [https://www.ebi.ac.uk/pdbsum/3m2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m2d ProSAT]</span></td></tr>
-[[3m2d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M2D OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m2/3m2d_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m2d ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Cytochrome c peroxidase|Cytochrome c peroxidase]]
+*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:020230048</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: Cytochrome-c peroxidase]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Meharenna, Y T.]]
+[[Category: Meharenna YT]]
-[[Category: Poulos, T L.]]
+[[Category: Poulos TL]]
-[[Category: Heme]]
-[[Category: Hydrogen peroxide]]
-[[Category: Iron]]
-[[Category: Metal-binding]]
-[[Category: Mitochondrion]]
-[[Category: Oxidoreductase]]
-[[Category: Peroxidase]]